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Items: 1 to 20 of 102

1.

Mechanism of chromatin remodeling and recovery during passage of RNA polymerase II.

Kulaeva OI, Gaykalova DA, Pestov NA, Golovastov VV, Vassylyev DG, Artsimovitch I, Studitsky VM.

Nat Struct Mol Biol. 2009 Dec;16(12):1272-8. doi: 10.1038/nsmb.1689. Epub 2009 Nov 22.

2.

Mechanism of histone survival during transcription by RNA polymerase II.

Kulaeva OI, Studitsky VM.

Transcription. 2010 Sep-Oct;1(2):85-8. doi: 10.4161/trns.1.2.12519.

3.

Mechanism of transcription through a nucleosome by RNA polymerase II.

Kulaeva OI, Hsieh FK, Chang HW, Luse DS, Studitsky VM.

Biochim Biophys Acta. 2013 Jan;1829(1):76-83. doi: 10.1016/j.bbagrm.2012.08.015. Epub 2012 Sep 6. Review.

4.

Histone Sin mutations promote nucleosome traversal and histone displacement by RNA polymerase II.

Hsieh FK, Fisher M, Ujvári A, Studitsky VM, Luse DS.

EMBO Rep. 2010 Sep;11(9):705-10. doi: 10.1038/embor.2010.113. Epub 2010 Aug 13.

5.

RNA polymerase complexes cooperate to relieve the nucleosomal barrier and evict histones.

Kulaeva OI, Hsieh FK, Studitsky VM.

Proc Natl Acad Sci U S A. 2010 Jun 22;107(25):11325-30. doi: 10.1073/pnas.1001148107. Epub 2010 Jun 7.

6.

Analysis of the mechanism of nucleosome survival during transcription.

Chang HW, Kulaeva OI, Shaytan AK, Kibanov M, Kuznedelov K, Severinov KV, Kirpichnikov MP, Clark DJ, Studitsky VM.

Nucleic Acids Res. 2014 Feb;42(3):1619-27. doi: 10.1093/nar/gkt1120. Epub 2013 Nov 13.

7.

Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

Kireeva ML, Walter W, Tchernajenko V, Bondarenko V, Kashlev M, Studitsky VM.

Mol Cell. 2002 Mar;9(3):541-52.

8.

Structural analysis of nucleosomal barrier to transcription.

Gaykalova DA, Kulaeva OI, Volokh O, Shaytan AK, Hsieh FK, Kirpichnikov MP, Sokolova OS, Studitsky VM.

Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):E5787-95. doi: 10.1073/pnas.1508371112. Epub 2015 Oct 12.

9.

Histone exchange, chromatin structure and the regulation of transcription.

Venkatesh S, Workman JL.

Nat Rev Mol Cell Biol. 2015 Mar;16(3):178-89. doi: 10.1038/nrm3941. Epub 2015 Feb 4. Review.

PMID:
25650798
10.

Negotiating the nucleosome: factors that allow RNA polymerase II to elongate through chromatin.

Armstrong JA.

Biochem Cell Biol. 2007 Aug;85(4):426-34. Review.

PMID:
17713578
11.

Bacterial polymerase and yeast polymerase II use similar mechanisms for transcription through nucleosomes.

Walter W, Kireeva ML, Studitsky VM, Kashlev M.

J Biol Chem. 2003 Sep 19;278(38):36148-56. Epub 2003 Jul 8.

12.

Splitting of H3-H4 tetramers at transcriptionally active genes undergoing dynamic histone exchange.

Katan-Khaykovich Y, Struhl K.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1296-301. doi: 10.1073/pnas.1018308108. Epub 2011 Jan 10.

13.

Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II.

Hodges C, Bintu L, Lubkowska L, Kashlev M, Bustamante C.

Science. 2009 Jul 31;325(5940):626-8. doi: 10.1126/science.1172926.

14.

Nature of the nucleosomal barrier to RNA polymerase II.

Kireeva ML, Hancock B, Cremona GH, Walter W, Studitsky VM, Kashlev M.

Mol Cell. 2005 Apr 1;18(1):97-108.

15.

Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast.

Wilhelm BT, Marguerat S, Aligianni S, Codlin S, Watt S, Bähler J.

Genome Biol. 2011 Aug 22;12(8):R82. doi: 10.1186/gb-2011-12-8-r82.

16.

Transcription through chromatin by RNA polymerase II: histone displacement and exchange.

Kulaeva OI, Gaykalova DA, Studitsky VM.

Mutat Res. 2007 May 1;618(1-2):116-29. Epub 2007 Jan 21. Review.

17.

Transcribing through the nucleosome.

Teves SS, Weber CM, Henikoff S.

Trends Biochem Sci. 2014 Dec;39(12):577-86. Review.

PMID:
25455758
18.

Histone chaperone FACT action during transcription through chromatin by RNA polymerase II.

Hsieh FK, Kulaeva OI, Patel SS, Dyer PN, Luger K, Reinberg D, Studitsky VM.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7654-9. doi: 10.1073/pnas.1222198110. Epub 2013 Apr 22.

19.

Nucleosome dynamics during chromatin remodeling in vivo.

Ramachandran S, Henikoff S.

Nucleus. 2016;7(1):20-6. doi: 10.1080/19491034.2016.1149666. Epub 2016 Mar 2.

20.

Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II.

Bondarenko VA, Steele LM, Ujvári A, Gaykalova DA, Kulaeva OI, Polikanov YS, Luse DS, Studitsky VM.

Mol Cell. 2006 Nov 3;24(3):469-79.

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