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Items: 1 to 20 of 169

1.

mimiRNA: a microRNA expression profiler and classification resource designed to identify functional correlations between microRNAs and their targets.

Ritchie W, Flamant S, Rasko JE.

Bioinformatics. 2010 Jan 15;26(2):223-7. doi: 10.1093/bioinformatics/btp649. Epub 2009 Nov 17.

PMID:
19933167
2.

Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data.

Wang YP, Li KB.

BMC Genomics. 2009 May 12;10:218. doi: 10.1186/1471-2164-10-218.

3.

Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours.

Sun R, Fu X, Li Y, Xie Y, Mao Y.

BMC Genomics. 2009 Feb 26;10:93. doi: 10.1186/1471-2164-10-93.

4.

miRGator: an integrated system for functional annotation of microRNAs.

Nam S, Kim B, Shin S, Lee S.

Nucleic Acids Res. 2008 Jan;36(Database issue):D159-64. Epub 2007 Oct 16.

5.

Predicting microRNA targets in time-series microarray experiments via functional data analysis.

Parker BJ, Wen J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S32. doi: 10.1186/1471-2105-10-S1-S32.

6.

Target identification of microRNAs expressed highly in human embryonic stem cells.

Li SS, Yu SL, Kao LP, Tsai ZY, Singh S, Chen BZ, Ho BC, Liu YH, Yang PC.

J Cell Biochem. 2009 Apr 15;106(6):1020-30. doi: 10.1002/jcb.22084.

PMID:
19229866
7.

miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes.

Hsu SD, Chu CH, Tsou AP, Chen SJ, Chen HC, Hsu PW, Wong YH, Chen YH, Chen GH, Huang HD.

Nucleic Acids Res. 2008 Jan;36(Database issue):D165-9. Epub 2007 Nov 19.

8.

Global correlation analysis for micro-RNA and mRNA expression profiles in human cell lines.

Ruike Y, Ichimura A, Tsuchiya S, Shimizu K, Kunimoto R, Okuno Y, Tsujimoto G.

J Hum Genet. 2008;53(6):515-23. doi: 10.1007/s10038-008-0279-x. Epub 2008 May 10.

PMID:
18465083
9.

Computational identification of novel microRNAs and targets in Brassica napus.

Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM.

FEBS Lett. 2007 Apr 3;581(7):1464-74. Epub 2007 Mar 8.

10.

Computational analysis of microRNA targets in Caenorhabditis elegans.

Watanabe Y, Yachie N, Numata K, Saito R, Kanai A, Tomita M.

Gene. 2006 Jan 3;365:2-10. Epub 2005 Dec 13.

PMID:
16356665
11.

MicroRNA expression profiling in cancer from a bioinformatics prospective.

Gusev Y, Brackett DJ.

Expert Rev Mol Diagn. 2007 Nov;7(6):787-92. Review.

PMID:
18020908
12.

S-MED: sarcoma microRNA expression database.

Sarver AL, Phalak R, Thayanithy V, Subramanian S.

Lab Invest. 2010 May;90(5):753-61. doi: 10.1038/labinvest.2010.53. Epub 2010 Mar 8.

13.

A genome-wide map of conserved microRNA targets in C. elegans.

Lall S, Grün D, Krek A, Chen K, Wang YL, Dewey CN, Sood P, Colombo T, Bray N, Macmenamin P, Kao HL, Gunsalus KC, Pachter L, Piano F, Rajewsky N.

Curr Biol. 2006 Mar 7;16(5):460-71. Epub 2006 Feb 2.

14.

Characterization of B- and T-lineage acute lymphoblastic leukemia by integrated analysis of MicroRNA and mRNA expression profiles.

Fulci V, Colombo T, Chiaretti S, Messina M, Citarella F, Tavolaro S, Guarini A, Foà R, Macino G.

Genes Chromosomes Cancer. 2009 Dec;48(12):1069-82. doi: 10.1002/gcc.20709.

PMID:
19760605
15.

Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.

16.

MicroRNA identification based on sequence and structure alignment.

Wang X, Zhang J, Li F, Gu J, He T, Zhang X, Li Y.

Bioinformatics. 2005 Sep 15;21(18):3610-4. Epub 2005 Jun 30.

PMID:
15994192
17.

Human microRNA target identification by RRSM.

Hsieh WJ, Wang H.

J Theor Biol. 2011 Oct 7;286(1):79-84. doi: 10.1016/j.jtbi.2011.06.022. Epub 2011 Jun 29.

PMID:
21736879
18.

Multi-class cancer classification through gene expression profiles: microRNA versus mRNA.

Peng S, Zeng X, Li X, Peng X, Chen L.

J Genet Genomics. 2009 Jul;36(7):409-16. doi: 10.1016/S1673-8527(08)60130-7.

PMID:
19631915
19.
20.

Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application.

Roubelakis MG, Zotos P, Papachristoudis G, Michalopoulos I, Pappa KI, Anagnou NP, Kossida S.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S20. doi: 10.1186/1471-2105-10-S6-S20.

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