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Items: 1 to 20 of 146

1.

Novel protein-protein interactions inferred from literature context.

van Haagen HH, 't Hoen PA, Botelho Bovo A, de Morrée A, van Mulligen EM, Chichester C, Kors JA, den Dunnen JT, van Ommen GJ, van der Maarel SM, Kern VM, Mons B, Schuemie MJ.

PLoS One. 2009 Nov 18;4(11):e7894. doi: 10.1371/journal.pone.0007894.

2.

Computational methods for the prediction of protein-protein interactions.

Xia JF, Wang SL, Lei YK.

Protein Pept Lett. 2010 Sep;17(9):1069-78.

PMID:
20509849
3.

Protein-protein interaction as a predictor of subcellular location.

Shin CJ, Wong S, Davis MJ, Ragan MA.

BMC Syst Biol. 2009 Feb 25;3:28. doi: 10.1186/1752-0509-3-28.

4.

Utilizing shared interacting domain patterns and Gene Ontology information to improve protein-protein interaction prediction.

Roslan R, Othman RM, Shah ZA, Kasim S, Asmuni H, Taliba J, Hassan R, Zakaria Z.

Comput Biol Med. 2010 Jun;40(6):555-64. doi: 10.1016/j.compbiomed.2010.03.009. Epub 2010 Apr 24.

PMID:
20417930
5.

Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.

Zhou H, Wong L.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S20. doi: 10.1186/1471-2164-12-S3-S20. Epub 2011 Nov 30.

6.

Prediction of protein-protein interactions from protein sequence using local descriptors.

Yang L, Xia JF, Gui J.

Protein Pept Lett. 2010 Sep;17(9):1085-90.

PMID:
20509850
7.

A discriminative approach for identifying domain-domain interactions from protein-protein interactions.

Zhao XM, Chen L, Aihara K.

Proteins. 2010 Apr;78(5):1243-53. doi: 10.1002/prot.22643.

PMID:
20027642
8.

Protein-protein interaction site predictions with three-dimensional probability distributions of interacting atoms on protein surfaces.

Chen CT, Peng HP, Jian JW, Tsai KC, Chang JY, Yang EW, Chen JB, Ho SY, Hsu WL, Yang AS.

PLoS One. 2012;7(6):e37706. doi: 10.1371/journal.pone.0037706. Epub 2012 Jun 6.

9.

Amino-acid residue association models for large scale protein-protein interaction prediction.

Rao R, Tun K, Lakshminarayanan S, Dhar PK.

In Silico Biol. 2009;9(4):179-94.

PMID:
20109148
10.

Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions.

Zhou H, Rezaei J, Hugo W, Gao S, Jin J, Fan M, Yong CH, Wozniak M, Wong L.

BMC Syst Biol. 2013;7 Suppl 6:S6. doi: 10.1186/1752-0509-7-S6-S6. Epub 2013 Dec 13.

11.

In silico discovery and experimental validation of new protein-protein interactions.

van Haagen HH, 't Hoen PA, de Morrée A, van Roon-Mom WM, Peters DJ, Roos M, Mons B, van Ommen GJ, Schuemie MJ.

Proteomics. 2011 Mar;11(5):843-53. doi: 10.1002/pmic.201000398. Epub 2011 Jan 31.

PMID:
21280221
12.

Understanding protein-protein interactions using local structural features.

Planas-Iglesias J, Bonet J, García-García J, Marín-López MA, Feliu E, Oliva B.

J Mol Biol. 2013 Apr 12;425(7):1210-24. doi: 10.1016/j.jmb.2013.01.014. Epub 2013 Jan 23.

PMID:
23353828
13.

Probabilistic prediction and ranking of human protein-protein interactions.

Scott MS, Barton GJ.

BMC Bioinformatics. 2007 Jul 5;8:239.

14.

Predicting protein-protein interactions based only on sequences information.

Shen J, Zhang J, Luo X, Zhu W, Yu K, Chen K, Li Y, Jiang H.

Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4337-41. Epub 2007 Mar 5.

15.

Inferring protein function by domain context similarities in protein-protein interaction networks.

Zhang S, Chen H, Liu K, Sun Z.

BMC Bioinformatics. 2009 Dec 2;10:395. doi: 10.1186/1471-2105-10-395.

16.

Efficient prediction of co-complexed proteins based on coevolution.

de Vienne DM, Azé J.

PLoS One. 2012;7(11):e48728. doi: 10.1371/journal.pone.0048728. Epub 2012 Nov 9.

17.

InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes.

Sun J, Sun Y, Ding G, Liu Q, Wang C, He Y, Shi T, Li Y, Zhao Z.

BMC Bioinformatics. 2007 Oct 26;8:414.

18.

Measuring prediction capacity of individual verbs for the identification of protein interactions.

Rebholz-Schuhmann D, Jimeno-Yepes A, Arregui M, Kirsch H.

J Biomed Inform. 2010 Apr;43(2):200-7. doi: 10.1016/j.jbi.2009.09.007. Epub 2009 Oct 8.

19.

DomPep--a general method for predicting modular domain-mediated protein-protein interactions.

Li L, Zhao B, Du J, Zhang K, Ling CX, Li SS.

PLoS One. 2011;6(10):e25528. doi: 10.1371/journal.pone.0025528. Epub 2011 Oct 7.

20.

Interaction between intrinsically disordered proteins frequently occurs in a human protein-protein interaction network.

Shimizu K, Toh H.

J Mol Biol. 2009 Oct 9;392(5):1253-65. doi: 10.1016/j.jmb.2009.07.088. Epub 2009 Aug 3.

PMID:
19660471

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