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Items: 1 to 20 of 312

1.

MicrobesOnline: an integrated portal for comparative and functional genomics.

Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, Chivian D, Friedland GD, Huang KH, Keller K, Novichkov PS, Dubchak IL, Alm EJ, Arkin AP.

Nucleic Acids Res. 2010 Jan;38(Database issue):D396-400. doi: 10.1093/nar/gkp919. Epub 2009 Nov 11.

2.

The MicrobesOnline Web site for comparative genomics.

Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP.

Genome Res. 2005 Jul;15(7):1015-22.

3.

The comprehensive microbial resource.

Davidsen T, Beck E, Ganapathy A, Montgomery R, Zafar N, Yang Q, Madupu R, Goetz P, Galinsky K, White O, Sutton G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D340-5. doi: 10.1093/nar/gkp912. Epub 2009 Nov 5.

4.

MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity.

Uchiyama I, Higuchi T, Kawai M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D361-5. doi: 10.1093/nar/gkp948. Epub 2009 Nov 11.

5.

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.

Muller J, Szklarczyk D, Julien P, Letunic I, Roth A, Kuhn M, Powell S, von Mering C, Doerks T, Jensen LJ, Bork P.

Nucleic Acids Res. 2010 Jan;38(Database issue):D190-5. doi: 10.1093/nar/gkp951. Epub 2009 Nov 9.

6.

GenomeRNAi: a database for cell-based RNAi phenotypes. 2009 update.

Gilsdorf M, Horn T, Arziman Z, Pelz O, Kiner E, Boutros M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D448-52. doi: 10.1093/nar/gkp1038. Epub 2009 Nov 12.

7.

Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results.

Gauthier NP, Jensen LJ, Wernersson R, Brunak S, Jensen TS.

Nucleic Acids Res. 2010 Jan;38(Database issue):D699-702. doi: 10.1093/nar/gkp1044. Epub 2009 Nov 24.

8.

SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology.

Duan J, Li R, Cheng D, Fan W, Zha X, Cheng T, Wu Y, Wang J, Mita K, Xiang Z, Xia Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D453-6. doi: 10.1093/nar/gkp801. Epub 2009 Sep 30.

9.

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.

Novichkov PS, Laikova ON, Novichkova ES, Gelfand MS, Arkin AP, Dubchak I, Rodionov DA.

Nucleic Acids Res. 2010 Jan;38(Database issue):D111-8. doi: 10.1093/nar/gkp894. Epub 2009 Nov 1.

10.

The Mouse Genome Database: enhancements and updates.

Bult CJ, Kadin JA, Richardson JE, Blake JA, Eppig JT; Mouse Genome Database Group.

Nucleic Acids Res. 2010 Jan;38(Database issue):D586-92. doi: 10.1093/nar/gkp880. Epub 2009 Oct 27.

11.

Ensembl Genomes: extending Ensembl across the taxonomic space.

Kersey PJ, Lawson D, Birney E, Derwent PS, Haimel M, Herrero J, Keenan S, Kerhornou A, Koscielny G, Kähäri A, Kinsella RJ, Kulesha E, Maheswari U, Megy K, Nuhn M, Proctor G, Staines D, Valentin F, Vilella AJ, Yates A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D563-9. doi: 10.1093/nar/gkp871. Epub 2009 Nov 1.

12.

ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes.

Kichenaradja P, Siguier P, Pérochon J, Chandler M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D62-8. doi: 10.1093/nar/gkp947. Epub 2009 Nov 11.

13.

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.

Liolios K, Chen IM, Mavromatis K, Tavernarakis N, Hugenholtz P, Markowitz VM, Kyrpides NC.

Nucleic Acids Res. 2010 Jan;38(Database issue):D346-54. doi: 10.1093/nar/gkp848. Epub 2009 Nov 13.

14.

The integrated microbial genomes system: an expanding comparative analysis resource.

Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2010 Jan;38(Database issue):D382-90. doi: 10.1093/nar/gkp887. Epub 2009 Oct 28.

15.

The bioinformatics resource for oral pathogens.

Chen T, Abbey K, Deng WJ, Cheng MC.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W734-40.

16.

PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome.

Schlüter A, Real-Chicharro A, Gabaldón T, Sánchez-Jiménez F, Pujol A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D800-5. doi: 10.1093/nar/gkp935. Epub 2009 Nov 5.

17.

EuPathDB: a portal to eukaryotic pathogen databases.

Aurrecoechea C, Brestelli J, Brunk BP, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer ET, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Srinivasamoorthy G, Stoeckert CJ Jr, Thibodeau R, Treatman C, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D415-9. doi: 10.1093/nar/gkp941. Epub 2009 Nov 13.

18.

Megx.net: integrated database resource for marine ecological genomics.

Kottmann R, Kostadinov I, Duhaime MB, Buttigieg PL, Yilmaz P, Hankeln W, Waldmann J, Glöckner FO.

Nucleic Acids Res. 2010 Jan;38(Database issue):D391-5. doi: 10.1093/nar/gkp918. Epub 2009 Oct 25.

19.

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium.

Mi H, Dong Q, Muruganujan A, Gaudet P, Lewis S, Thomas PD.

Nucleic Acids Res. 2010 Jan;38(Database issue):D204-10. doi: 10.1093/nar/gkp1019. Epub 2009 Dec 16.

20.

FunSimMat update: new features for exploring functional similarity.

Schlicker A, Albrecht M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D244-8. doi: 10.1093/nar/gkp979. Epub 2009 Nov 18.

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