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Items: 1 to 20 of 265

1.

GWIDD: Genome-wide protein docking database.

Kundrotas PJ, Zhu Z, Vakser IA.

Nucleic Acids Res. 2010 Jan;38(Database issue):D513-7. doi: 10.1093/nar/gkp944. Epub 2009 Nov 9.

2.

GWIDD: a comprehensive resource for genome-wide structural modeling of protein-protein interactions.

Kundrotas PJ, Zhu Z, Vakser IA.

Hum Genomics. 2012 Jul 11;6:7. doi: 10.1186/1479-7364-6-7. Review.

3.

MINT, the molecular interaction database: 2009 update.

Ceol A, Chatr Aryamontri A, Licata L, Peluso D, Briganti L, Perfetto L, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D532-9. doi: 10.1093/nar/gkp983. Epub 2009 Nov 6.

4.

DRYGIN: a database of quantitative genetic interaction networks in yeast.

Koh JL, Ding H, Costanzo M, Baryshnikova A, Toufighi K, Bader GD, Myers CL, Andrews BJ, Boone C.

Nucleic Acids Res. 2010 Jan;38(Database issue):D502-7. doi: 10.1093/nar/gkp820. Epub 2009 Oct 30.

5.

The integrated microbial genomes system: an expanding comparative analysis resource.

Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2010 Jan;38(Database issue):D382-90. doi: 10.1093/nar/gkp887. Epub 2009 Oct 28.

6.

CyanoBase: the cyanobacteria genome database update 2010.

Nakao M, Okamoto S, Kohara M, Fujishiro T, Fujisawa T, Sato S, Tabata S, Kaneko T, Nakamura Y.

Nucleic Acids Res. 2010 Jan;38(Database issue):D379-81. doi: 10.1093/nar/gkp915. Epub 2009 Oct 30.

7.

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community.

Arnaud MB, Chibucos MC, Costanzo MC, Crabtree J, Inglis DO, Lotia A, Orvis J, Shah P, Skrzypek MS, Binkley G, Miyasato SR, Wortman JR, Sherlock G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D420-7. doi: 10.1093/nar/gkp751. Epub 2009 Sep 22.

8.

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.

Liolios K, Chen IM, Mavromatis K, Tavernarakis N, Hugenholtz P, Markowitz VM, Kyrpides NC.

Nucleic Acids Res. 2010 Jan;38(Database issue):D346-54. doi: 10.1093/nar/gkp848. Epub 2009 Nov 13.

9.

The Negatome database: a reference set of non-interacting protein pairs.

Smialowski P, Pagel P, Wong P, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Rattei T, Frishman D, Ruepp A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D540-4. doi: 10.1093/nar/gkp1026. Epub 2009 Nov 17.

10.

PMRD: plant microRNA database.

Zhang Z, Yu J, Li D, Zhang Z, Liu F, Zhou X, Wang T, Ling Y, Su Z.

Nucleic Acids Res. 2010 Jan;38(Database issue):D806-13. doi: 10.1093/nar/gkp818. Epub 2009 Oct 6.

11.

SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions.

Preissner S, Kroll K, Dunkel M, Senger C, Goldsobel G, Kuzman D, Guenther S, Winnenburg R, Schroeder M, Preissner R.

Nucleic Acids Res. 2010 Jan;38(Database issue):D237-43. doi: 10.1093/nar/gkp970. Epub 2009 Nov 24.

12.

EuPathDB: a portal to eukaryotic pathogen databases.

Aurrecoechea C, Brestelli J, Brunk BP, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Innamorato F, Iodice J, Kissinger JC, Kraemer ET, Li W, Miller JA, Nayak V, Pennington C, Pinney DF, Roos DS, Ross C, Srinivasamoorthy G, Stoeckert CJ Jr, Thibodeau R, Treatman C, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D415-9. doi: 10.1093/nar/gkp941. Epub 2009 Nov 13.

13.

MouseIndelDB: a database integrating genomic indel polymorphisms that distinguish mouse strains.

Akagi K, Stephens RM, Li J, Evdokimov E, Kuehn MR, Volfovsky N, Symer DE.

Nucleic Acids Res. 2010 Jan;38(Database issue):D600-6. doi: 10.1093/nar/gkp1046. Epub 2009 Nov 20.

14.

The IntAct molecular interaction database in 2010.

Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S, Khadake J, Kerssemakers J, Leroy C, Menden M, Michaut M, Montecchi-Palazzi L, Neuhauser SN, Orchard S, Perreau V, Roechert B, van Eijk K, Hermjakob H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D525-31. doi: 10.1093/nar/gkp878. Epub 2009 Oct 22.

15.

Saccharomyces Genome Database provides mutant phenotype data.

Engel SR, Balakrishnan R, Binkley G, Christie KR, Costanzo MC, Dwight SS, Fisk DG, Hirschman JE, Hitz BC, Hong EL, Krieger CJ, Livstone MS, Miyasato SR, Nash R, Oughtred R, Park J, Skrzypek MS, Weng S, Wong ED, Dolinski K, Botstein D, Cherry JM.

Nucleic Acids Res. 2010 Jan;38(Database issue):D433-6. doi: 10.1093/nar/gkp917. Epub 2009 Nov 11.

16.

New tools at the Candida Genome Database: biochemical pathways and full-text literature search.

Skrzypek MS, Arnaud MB, Costanzo MC, Inglis DO, Shah P, Binkley G, Miyasato SR, Sherlock G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D428-32. doi: 10.1093/nar/gkp836. Epub 2009 Oct 6.

17.

TriTrypDB: a functional genomic resource for the Trypanosomatidae.

Aslett M, Aurrecoechea C, Berriman M, Brestelli J, Brunk BP, Carrington M, Depledge DP, Fischer S, Gajria B, Gao X, Gardner MJ, Gingle A, Grant G, Harb OS, Heiges M, Hertz-Fowler C, Houston R, Innamorato F, Iodice J, Kissinger JC, Kraemer E, Li W, Logan FJ, Miller JA, Mitra S, Myler PJ, Nayak V, Pennington C, Phan I, Pinney DF, Ramasamy G, Rogers MB, Roos DS, Ross C, Sivam D, Smith DF, Srinivasamoorthy G, Stoeckert CJ Jr, Subramanian S, Thibodeau R, Tivey A, Treatman C, Velarde G, Wang H.

Nucleic Acids Res. 2010 Jan;38(Database issue):D457-62. doi: 10.1093/nar/gkp851. Epub 2009 Oct 20.

18.

Megx.net: integrated database resource for marine ecological genomics.

Kottmann R, Kostadinov I, Duhaime MB, Buttigieg PL, Yilmaz P, Hankeln W, Waldmann J, Glöckner FO.

Nucleic Acids Res. 2010 Jan;38(Database issue):D391-5. doi: 10.1093/nar/gkp918. Epub 2009 Oct 25.

19.

Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community.

Cormier CY, Mohr SE, Zuo D, Hu Y, Rolfs A, Kramer J, Taycher E, Kelley F, Fiacco M, Turnbull G, LaBaer J.

Nucleic Acids Res. 2010 Jan;38(Database issue):D743-9. doi: 10.1093/nar/gkp999. Epub 2009 Nov 11.

20.

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.

Caspi R, Altman T, Dale JM, Dreher K, Fulcher CA, Gilham F, Kaipa P, Karthikeyan AS, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Paley S, Popescu L, Pujar A, Shearer AG, Zhang P, Karp PD.

Nucleic Acids Res. 2010 Jan;38(Database issue):D473-9. doi: 10.1093/nar/gkp875. Epub 2009 Oct 22.

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