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Items: 1 to 20 of 88

1.

DNA barcode analysis: a comparison of phylogenetic and statistical classification methods.

Austerlitz F, David O, Schaeffer B, Bleakley K, Olteanu M, Leblois R, Veuille M, Laredo C.

BMC Bioinformatics. 2009 Nov 10;10 Suppl 14:S10. doi: 10.1186/1471-2105-10-S14-S10.

3.

DNA barcoding of recently diverged species: relative performance of matching methods.

van Velzen R, Weitschek E, Felici G, Bakker FT.

PLoS One. 2012;7(1):e30490. doi: 10.1371/journal.pone.0030490. Epub 2012 Jan 17.

4.

Learning to classify species with barcodes.

Bertolazzi P, Felici G, Weitschek E.

BMC Bioinformatics. 2009 Nov 10;10 Suppl 14:S7. doi: 10.1186/1471-2105-10-S14-S7.

5.

DNA barcoding of arbuscular mycorrhizal fungi.

Stockinger H, Krüger M, Schüssler A.

New Phytol. 2010 Jul;187(2):461-74. doi: 10.1111/j.1469-8137.2010.03262.x. Epub 2010 Apr 23.

6.

Mitochondrial DNA diversity in the Llanos de Moxos: Moxo, Movima and Yuracare Amerindian populations from Bolivia lowlands.

Bert F, Corella A, Gené M, Pérez-Pérez A, Turbón D.

Ann Hum Biol. 2004 Jan-Feb;31(1):9-28.

PMID:
14742162
7.

Phylogenetic reconstruction and DNA barcoding for closely related pine moth species (Dendrolimus) in China with multiple gene markers.

Dai QY, Gao Q, Wu CS, Chesters D, Zhu CD, Zhang AB.

PLoS One. 2012;7(4):e32544. doi: 10.1371/journal.pone.0032544. Epub 2012 Apr 3.

8.

PCA and clustering reveal alternate mtDNA phylogeny of N and M clades.

Alexe G, Satya RV, Seiler M, Platt D, Bhanot T, Hui S, Tanaka M, Levine AJ, Bhanot G.

J Mol Evol. 2008 Nov;67(5):465-87. doi: 10.1007/s00239-008-9148-7. Epub 2008 Oct 15.

PMID:
18855041
9.

ddRAD-seq phylogenetics based on nucleotide, indel, and presence-absence polymorphisms: Analyses of two avian genera with contrasting histories.

DaCosta JM, Sorenson MD.

Mol Phylogenet Evol. 2016 Jan;94(Pt A):122-35. doi: 10.1016/j.ympev.2015.07.026. Epub 2015 Aug 13.

PMID:
26279345
10.

Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salamander (Ambystoma tigrinum) species complex.

O'Neill EM, Schwartz R, Bullock CT, Williams JS, Shaffer HB, Aguilar-Miguel X, Parra-Olea G, Weisrock DW.

Mol Ecol. 2013 Jan;22(1):111-29. doi: 10.1111/mec.12049. Epub 2012 Oct 12.

PMID:
23062080
11.

A protocol for species delineation of public DNA databases, applied to the Insecta.

Chesters D, Zhu CD.

Syst Biol. 2014 Sep;63(5):712-25. doi: 10.1093/sysbio/syu038. Epub 2014 Jun 14.

PMID:
24929897
12.

Assessment of three mitochondrial genes (16S, Cytb, CO1) for identifying species in the Praomyini tribe (Rodentia: Muridae).

Nicolas V, Schaeffer B, Missoup AD, Kennis J, Colyn M, Denys C, Tatard C, Cruaud C, Laredo C.

PLoS One. 2012;7(5):e36586. doi: 10.1371/journal.pone.0036586. Epub 2012 May 4.

13.

Monophyly of clade III nematodes is not supported by phylogenetic analysis of complete mitochondrial genome sequences.

Park JK, Sultana T, Lee SH, Kang S, Kim HK, Min GS, Eom KS, Nadler SA.

BMC Genomics. 2011 Aug 3;12:392. doi: 10.1186/1471-2164-12-392.

14.

A k-mer-based barcode DNA classification methodology based on spectral representation and a neural gas network.

Fiannaca A, La Rosa M, Rizzo R, Urso A.

Artif Intell Med. 2015 Jul;64(3):173-84. doi: 10.1016/j.artmed.2015.06.002. Epub 2015 Jul 4.

PMID:
26170017
15.

Coalescent-based DNA barcoding: multilocus analysis and robustness.

David O, Larédo C, Leblois R, Schaeffer B, Vergne N.

J Comput Biol. 2012 Mar;19(3):271-8. doi: 10.1089/cmb.2011.0122.

PMID:
22401591
16.

Efficient alignment-free DNA barcode analytics.

Kuksa P, Pavlovic V.

BMC Bioinformatics. 2009 Nov 10;10 Suppl 14:S9. doi: 10.1186/1471-2105-10-S14-S9.

17.

Mitochondrial cox1 sequence data reliably uncover patterns of insect diversity but suffer from high lineage-idiosyncratic error rates.

Hendrich L, Pons J, Ribera I, Balke M.

PLoS One. 2010 Dec 28;5(12):e14448. doi: 10.1371/journal.pone.0014448.

18.

Rapid DNA barcoding analysis of large datasets using the composition vector method.

Chu KH, Xu M, Li CP.

BMC Bioinformatics. 2009 Nov 10;10 Suppl 14:S8. doi: 10.1186/1471-2105-10-S14-S8.

19.

Exploration of phylogenetic data using a global sequence analysis method.

Chapus C, Dufraigne C, Edwards S, Giron A, Fertil B, Deschavanne P.

BMC Evol Biol. 2005 Nov 9;5:63.

20.

Bayesian coestimation of phylogeny and sequence alignment.

Lunter G, Miklós I, Drummond A, Jensen JL, Hein J.

BMC Bioinformatics. 2005 Apr 1;6:83.

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