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Items: 1 to 20 of 120

1.

Impact of sugar pucker on base pair and mispair stability.

Williams AA, Darwanto A, Theruvathu JA, Burdzy A, Neidigh JW, Sowers LC.

Biochemistry. 2009 Dec 22;48(50):11994-2004. doi: 10.1021/bi9014133.

2.
4.

The solution structure of double helical arabino nucleic acids (ANA and 2'F-ANA): effect of arabinoses in duplex-hairpin interconversion.

Martín-Pintado N, Yahyaee-Anzahaee M, Campos-Olivas R, Noronha AM, Wilds CJ, Damha MJ, González C.

Nucleic Acids Res. 2012 Oct;40(18):9329-39. doi: 10.1093/nar/gks672. Epub 2012 Jul 14.

5.

Base pairing configuration and stability of an oligonucleotide duplex containing a 5-chlorouracil-adenine base pair.

Theruvathu JA, Kim CH, Rogstad DK, Neidigh JW, Sowers LC.

Biochemistry. 2009 Aug 11;48(31):7539-46. doi: 10.1021/bi9007947.

6.

Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids.

Denisov AY, Noronha AM, Wilds CJ, Trempe JF, Pon RT, Gehring K, Damha MJ.

Nucleic Acids Res. 2001 Nov 1;29(21):4284-93.

7.

2'β-Fluoro-Tricyclo Nucleic Acids (2'F-tc-ANA): Thermal Duplex Stability, Structural Studies, and RNase H activation.

Istrate A, Katolik A, Istrate A, Leumann CJ.

Chemistry. 2017 May 6. doi: 10.1002/chem.201701476. [Epub ahead of print]

PMID:
28477335
8.

Synthesis and properties of 2'-O-neopentyl modified oligonucleotides.

Mathis G, Bourg S, Aci-Sèche S, Truffert JC, Asseline U.

Org Biomol Chem. 2013 Feb 28;11(8):1345-57. doi: 10.1039/c2ob26871j.

PMID:
23318410
9.

NMR solution structure of an oligonucleotide hairpin with a 2'F-ANA/RNA stem: implications for RNase H specificity toward DNA/RNA hybrid duplexes.

Trempe JF, Wilds CJ, Denisov AY, Pon RT, Damha MJ, Gehring K.

J Am Chem Soc. 2001 May 30;123(21):4896-903.

PMID:
11457316
10.

Synthesis and structural characterization of 2'-fluoro-α-L-RNA-modified oligonucleotides.

Bundgaard Jensen T, Pasternak A, Stahl Madsen A, Petersen M, Wengel J.

Chembiochem. 2011 Aug 16;12(12):1904-11. doi: 10.1002/cbic.201100161. Epub 2011 Jul 4.

PMID:
21728225
11.

Thermodynamic and hydration effects for the incorporation of a cationic 3-aminopropyl chain into DNA.

Soto AM, Kankia BI, Dande P, Gold B, Marky LA.

Nucleic Acids Res. 2002 Jul 15;30(14):3171-80.

12.

Sequence-dependent thermodynamic parameters for locked nucleic acid (LNA)-DNA duplex formation.

McTigue PM, Peterson RJ, Kahn JD.

Biochemistry. 2004 May 11;43(18):5388-405.

PMID:
15122905
13.

G-quadruplex induced stabilization by 2'-deoxy-2'-fluoro-D-arabinonucleic acids (2'F-ANA).

Peng CG, Damha MJ.

Nucleic Acids Res. 2007;35(15):4977-88. Epub 2007 Jul 17.

14.

Differential stability of 2'F-ANA*RNA and ANA*RNA hybrid duplexes: roles of structure, pseudohydrogen bonding, hydration, ion uptake and flexibility.

Watts JK, Martín-Pintado N, Gómez-Pinto I, Schwartzentruber J, Portella G, Orozco M, González C, Damha MJ.

Nucleic Acids Res. 2010 Apr;38(7):2498-511. doi: 10.1093/nar/gkp1225. Epub 2010 Jan 13.

15.

Comparison of the thermodynamics and base-pair dynamics of a full LNA:DNA duplex and of the isosequential DNA:DNA duplex.

Bruylants G, Boccongelli M, Snoussi K, Bartik K.

Biochemistry. 2009 Sep 8;48(35):8473-82. doi: 10.1021/bi900615z.

PMID:
19670874
16.

The 5-Me of thyminyl (T) interaction with the neighboring nucleobases dictate the relative stability of isosequential DNA-RNA hybrid duplexes.

Chatterjee S, Pathmasiri W, Chattopadhyaya J.

Org Biomol Chem. 2005 Nov 7;3(21):3911-5. Epub 2005 Sep 29.

PMID:
16240008
18.
19.

Watson-Crick base-pairing properties of tricyclo-DNA.

Renneberg D, Leumann CJ.

J Am Chem Soc. 2002 May 29;124(21):5993-6002.

PMID:
12022832
20.

Role of the heat capacity change in understanding and modeling melting thermodynamics of complementary duplexes containing standard and nucleobase-modified LNA.

Hughesman CB, Turner RF, Haynes CA.

Biochemistry. 2011 Jun 14;50(23):5354-68. doi: 10.1021/bi200223s. Epub 2011 May 18.

PMID:
21548576

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