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Items: 1 to 20 of 104

1.

Genome sequence, comparative analysis, and population genetics of the domestic horse.

Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, Imsland F, Lear TL, Adelson DL, Bailey E, Bellone RR, Blöcker H, Distl O, Edgar RC, Garber M, Leeb T, Mauceli E, MacLeod JN, Penedo MC, Raison JM, Sharpe T, Vogel J, Andersson L, Antczak DF, Biagi T, Binns MM, Chowdhary BP, Coleman SJ, Della Valle G, Fryc S, Guérin G, Hasegawa T, Hill EW, Jurka J, Kiialainen A, Lindgren G, Liu J, Magnani E, Mickelson JR, Murray J, Nergadze SG, Onofrio R, Pedroni S, Piras MF, Raudsepp T, Rocchi M, Røed KH, Ryder OA, Searle S, Skow L, Swinburne JE, Syvänen AC, Tozaki T, Valberg SJ, Vaudin M, White JR, Zody MC; Broad Institute Genome Sequencing Platform; Broad Institute Whole Genome Assembly Team, Lander ES, Lindblad-Toh K.

Science. 2009 Nov 6;326(5954):865-7. doi: 10.1126/science.1178158.

2.

Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps.

Murphy WJ, Larkin DM, Everts-van der Wind A, Bourque G, Tesler G, Auvil L, Beever JE, Chowdhary BP, Galibert F, Gatzke L, Hitte C, Meyers SN, Milan D, Ostrander EA, Pape G, Parker HG, Raudsepp T, Rogatcheva MB, Schook LB, Skow LC, Welge M, Womack JE, O'brien SJ, Pevzner PA, Lewin HA.

Science. 2005 Jul 22;309(5734):613-7.

3.

The dog genome: survey sequencing and comparative analysis.

Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM, Venter JC.

Science. 2003 Sep 26;301(5641):1898-903.

4.

A comparative gene map of the horse (Equus caballus).

Caetano AR, Shiue YL, Lyons LA, O'Brien SJ, Laughlin TF, Bowling AT, Murray JD.

Genome Res. 1999 Dec;9(12):1239-49.

5.

Horse domestication and conservation genetics of Przewalski's horse inferred from sex chromosomal and autosomal sequences.

Lau AN, Peng L, Goto H, Chemnick L, Ryder OA, Makova KD.

Mol Biol Evol. 2009 Jan;26(1):199-208. doi: 10.1093/molbev/msn239. Epub 2008 Oct 17.

PMID:
18931383
6.

Characterization of a full-length endogenous beta-retrovirus, EqERV-beta1, in the genome of the horse (Equus caballus).

van der Kuyl AC.

Viruses. 2011 Jun;3(6):620-8. doi: 10.3390/v3060620. Epub 2011 Jun 1.

7.

Genome-wide characterization of centromeric satellites from multiple mammalian genomes.

Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M.

Genome Res. 2011 Jan;21(1):137-45. doi: 10.1101/gr.111278.110. Epub 2010 Nov 16.

8.

FISH analysis comparing genome organization in the domestic horse (Equus caballus) to that of the Mongolian wild horse (E. przewalskii).

Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E.

Cytogenet Genome Res. 2003;102(1-4):222-5.

PMID:
14970707
9.

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication.

Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, Marques-Bonet T, Alkan C, Thomas GW, Hahn MW, Menotti-Raymond M, O'Brien SJ, Wilson RK, Lyons LA, Murphy WJ, Warren WC.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17230-5. doi: 10.1073/pnas.1410083111. Epub 2014 Nov 10.

10.

Using a pericentromeric interspersed repeat to recapitulate the phylogeny and expansion of human centromeric segmental duplications.

Horvath JE, Gulden CL, Bailey JA, Yohn C, McPherson JD, Prescott A, Roe BA, de Jong PJ, Ventura M, Misceo D, Archidiacono N, Zhao S, Schwartz S, Rocchi M, Eichler EE.

Mol Biol Evol. 2003 Sep;20(9):1463-79. Epub 2003 May 30.

PMID:
12777517
11.

Phylogeny of horse chromosome 5q in the genus Equus and centromere repositioning.

Piras FM, Nergadze SG, Poletto V, Cerutti F, Ryder OA, Leeb T, Raimondi E, Giulotto E.

Cytogenet Genome Res. 2009;126(1-2):165-72. doi: 10.1159/000245916. Epub 2009 Dec 9.

PMID:
20016166
12.

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.

Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E.

Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26.

PMID:
23803765
13.

A high density SNP array for the domestic horse and extant Perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies.

McCue ME, Bannasch DL, Petersen JL, Gurr J, Bailey E, Binns MM, Distl O, Guérin G, Hasegawa T, Hill EW, Leeb T, Lindgren G, Penedo MC, Røed KH, Ryder OA, Swinburne JE, Tozaki T, Valberg SJ, Vaudin M, Lindblad-Toh K, Wade CM, Mickelson JR.

PLoS Genet. 2012 Jan;8(1):e1002451. doi: 10.1371/journal.pgen.1002451. Epub 2012 Jan 12.

14.

Identification of genetic variation on the horse y chromosome and the tracing of male founder lineages in modern breeds.

Wallner B, Vogl C, Shukla P, Burgstaller JP, Druml T, Brem G.

PLoS One. 2013;8(4):e60015. doi: 10.1371/journal.pone.0060015. Epub 2013 Apr 3.

15.

The horse genome.

Chowdhary BP, Raudsepp T.

Genome Dyn. 2006;2:97-110. doi: 10.1159/000095098. Review.

PMID:
18753773
16.

The first-generation whole-genome radiation hybrid map in the horse identifies conserved segments in human and mouse genomes.

Chowdhary BP, Raudsepp T, Kata SR, Goh G, Millon LV, Allan V, Piumi F, Guérin G, Swinburne J, Binns M, Lear TL, Mickelson J, Murray J, Antczak DF, Womack JE, Skow LC.

Genome Res. 2003 Apr;13(4):742-51. Erratum in: Genome Res. 2003 Jun;13(6a):1258.

17.

Uncoupling of satellite DNA and centromeric function in the genus Equus.

Piras FM, Nergadze SG, Magnani E, Bertoni L, Attolini C, Khoriauli L, Raimondi E, Giulotto E.

PLoS Genet. 2010 Feb 12;6(2):e1000845. doi: 10.1371/journal.pgen.1000845.

18.

Whole mitochondrial genome sequencing of domestic horses reveals incorporation of extensive wild horse diversity during domestication.

Lippold S, Matzke NJ, Reissmann M, Hofreiter M.

BMC Evol Biol. 2011 Nov 14;11:328. doi: 10.1186/1471-2148-11-328.

19.

PRINS detection of 18S rDNA in pig, red fox and Chinese raccoon dog, and centromere DNA in horse.

Wnuk M, Oklejewicz B, Lewinska A, Zabek T, Bartosz G, Slota E, Bugno-Poniewierska M.

Hereditas. 2010 Dec;147(6):320-4. doi: 10.1111/j.1601-5223.2010.02201.x. Epub 2010 Dec 15.

20.

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