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Items: 1 to 20 of 105

1.

Simulation-based model selection for dynamical systems in systems and population biology.

Toni T, Stumpf MP.

Bioinformatics. 2010 Jan 1;26(1):104-10. doi: 10.1093/bioinformatics/btp619. Epub 2009 Oct 29.

2.

Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems.

Toni T, Welch D, Strelkowa N, Ipsen A, Stumpf MP.

J R Soc Interface. 2009 Feb 6;6(31):187-202.

3.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
4.

Bayesian parameter inference and model selection by population annealing in systems biology.

Murakami Y.

PLoS One. 2014 Aug 4;9(8):e104057. doi: 10.1371/journal.pone.0104057. eCollection 2014.

5.

Bayesian experimental design for models with intractable likelihoods.

Drovandi CC, Pettitt AN.

Biometrics. 2013 Dec;69(4):937-48. doi: 10.1111/biom.12081. Epub 2013 Oct 16.

PMID:
24131221
6.
7.

Optimizing threshold-schedules for sequential approximate Bayesian computation: applications to molecular systems.

Silk D, Filippi S, Stumpf MP.

Stat Appl Genet Mol Biol. 2013 Oct 1;12(5):603-18. doi: 10.1515/sagmb-2012-0043.

PMID:
24025688
8.

AABC: approximate approximate Bayesian computation for inference in population-genetic models.

Buzbas EO, Rosenberg NA.

Theor Popul Biol. 2015 Feb;99:31-42. doi: 10.1016/j.tpb.2014.09.002. Epub 2014 Sep 26.

9.

Likelihood free inference for Markov processes: a comparison.

Owen J, Wilkinson DJ, Gillespie CS.

Stat Appl Genet Mol Biol. 2015 Apr;14(2):189-209. doi: 10.1515/sagmb-2014-0072.

PMID:
25720092
10.

From qualitative data to quantitative models: analysis of the phage shock protein stress response in Escherichia coli.

Toni T, Jovanovic G, Huvet M, Buck M, Stumpf MP.

BMC Syst Biol. 2011 May 12;5:69. doi: 10.1186/1752-0509-5-69.

11.

BioBayes: a software package for Bayesian inference in systems biology.

Vyshemirsky V, Girolami M.

Bioinformatics. 2008 Sep 1;24(17):1933-4. doi: 10.1093/bioinformatics/btn338. Epub 2008 Jul 16.

PMID:
18632751
12.

Parametric and nonparametric population methods: their comparative performance in analysing a clinical dataset and two Monte Carlo simulation studies.

Bustad A, Terziivanov D, Leary R, Port R, Schumitzky A, Jelliffe R.

Clin Pharmacokinet. 2006;45(4):365-83.

PMID:
16584284
13.

Sequential Monte Carlo without likelihoods.

Sisson SA, Fan Y, Tanaka MM.

Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1760-5. Epub 2007 Jan 30. Erratum in: Proc Natl Acad Sci U S A. 2009 Sep 29;106(39):16889.

14.

Practical limits for reverse engineering of dynamical systems: a statistical analysis of sensitivity and parameter inferability in systems biology models.

Erguler K, Stumpf MP.

Mol Biosyst. 2011 May;7(5):1593-602. doi: 10.1039/c0mb00107d. Epub 2011 Mar 4.

PMID:
21380410
15.

Reduction of a Whole-Body Physiologically Based Pharmacokinetic Model to Stabilise the Bayesian Analysis of Clinical Data.

Wendling T, Tsamandouras N, Dumitras S, Pigeolet E, Ogungbenro K, Aarons L.

AAPS J. 2016 Jan;18(1):196-209. doi: 10.1208/s12248-015-9840-7. Epub 2015 Nov 4.

16.

Bayesian analysis of crossclassified spatial data with autocorrelation.

Sun L, Clayton MK.

Biometrics. 2008 Mar;64(1):74-84. Epub 2007 Aug 3.

PMID:
17680834
17.

Models for bounded systems with continuous dynamics.

Cangelosi AR, Hooten MB.

Biometrics. 2009 Sep;65(3):850-6. doi: 10.1111/j.1541-0420.2008.01130.x. Epub 2009 Feb 5.

PMID:
19210728
18.

A bayesian approach to the multistate Jolly-Seber capture-recapture model.

Dupuis JA, Schwarz CJ.

Biometrics. 2007 Dec;63(4):1015-22. Epub 2007 May 14.

PMID:
17501941
19.

Inference in high-dimensional parameter space.

O'Hare A.

J Comput Biol. 2015 Nov;22(11):997-1004. doi: 10.1089/cmb.2015.0086. Epub 2015 Jul 15.

PMID:
26176624
20.

Model choice problems using approximate Bayesian computation with applications to pathogen transmission data sets.

Lee XJ, Drovandi CC, Pettitt AN.

Biometrics. 2015 Mar;71(1):198-207. doi: 10.1111/biom.12249. Epub 2014 Oct 9.

PMID:
25303085

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