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Items: 1 to 20 of 108

1.

Open source bioimage informatics for cell biology.

Swedlow JR, Eliceiri KW.

Trends Cell Biol. 2009 Nov;19(11):656-60. doi: 10.1016/j.tcb.2009.08.007. Epub 2009 Oct 14.

2.

Bioimage informatics for experimental biology.

Swedlow JR, Goldberg IG, Eliceiri KW; OME Consortium.

Annu Rev Biophys. 2009;38:327-46. doi: 10.1146/annurev.biophys.050708.133641. Review.

3.

Bioimage informatics: a new area of engineering biology.

Peng H.

Bioinformatics. 2008 Sep 1;24(17):1827-36. doi: 10.1093/bioinformatics/btn346. Epub 2008 Jul 4. Review.

4.

Why bioimage informatics matters.

Myers G.

Nat Methods. 2012 Jun 28;9(7):659-60. doi: 10.1038/nmeth.2024.

PMID:
22743769
5.

Bioimage Informatics in the context of Drosophila research.

Jug F, Pietzsch T, Preibisch S, Tomancak P.

Methods. 2014 Jun 15;68(1):60-73. doi: 10.1016/j.ymeth.2014.04.004. Epub 2014 Apr 13. Review.

6.

Biological imaging software tools.

Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Swedlow JR, Tomancak P, Carpenter AE.

Nat Methods. 2012 Jun 28;9(7):697-710. doi: 10.1038/nmeth.2084. Erratum in: Nat Methods. 2012 Oct;9(10):1031. Stuurmann, Nico [corrected to Stuurman, Nico].

7.

Chapter 17: bioimage informatics for systems pharmacology.

Li F, Yin Z, Jin G, Zhao H, Wong ST.

PLoS Comput Biol. 2013 Apr;9(4):e1003043. doi: 10.1371/journal.pcbi.1003043. Epub 2013 Apr 25. Review.

8.

Current challenges in open-source bioimage informatics.

Cardona A, Tomancak P.

Nat Methods. 2012 Jun 28;9(7):661-5. doi: 10.1038/nmeth.2082.

PMID:
22743770
9.

Bioimage Informatics for Big Data.

Peng H, Zhou J, Zhou Z, Bria A, Li Y, Kleissas DM, Drenkow NG, Long B, Liu X, Chen H.

Adv Anat Embryol Cell Biol. 2016;219:263-72. doi: 10.1007/978-3-319-28549-8_10. Review.

PMID:
27207370
10.

Bioimage informatics for understanding spatiotemporal dynamics of cellular processes.

Yang G.

Wiley Interdiscip Rev Syst Biol Med. 2013 May-Jun;5(3):367-80. doi: 10.1002/wsbm.1214. Epub 2013 Feb 13. Review.

PMID:
23408597
11.

Icy: an open bioimage informatics platform for extended reproducible research.

de Chaumont F, Dallongeville S, Chenouard N, Hervé N, Pop S, Provoost T, Meas-Yedid V, Pankajakshan P, Lecomte T, Le Montagner Y, Lagache T, Dufour A, Olivo-Marin JC.

Nat Methods. 2012 Jun 28;9(7):690-6. doi: 10.1038/nmeth.2075.

PMID:
22743774
12.

Deciphering tissue morphodynamics using bioimage informatics.

Dufour AC, Jonker AH, Olivo-Marin JC.

Philos Trans R Soc Lond B Biol Sci. 2017 May 19;372(1720). pii: 20150512. doi: 10.1098/rstb.2015.0512. Review.

PMID:
28348249
13.

Machine learning in cell biology - teaching computers to recognize phenotypes.

Sommer C, Gerlich DW.

J Cell Sci. 2013 Dec 15;126(Pt 24):5529-39. doi: 10.1242/jcs.123604. Epub 2013 Nov 20. Review.

14.

Rapid development of medical imaging tools with open-source libraries.

Caban JJ, Joshi A, Nagy P.

J Digit Imaging. 2007 Nov;20 Suppl 1:83-93. Epub 2007 Aug 7.

15.

Bioimage informatics: a new category in Bioinformatics.

Peng H, Bateman A, Valencia A, Wren JD.

Bioinformatics. 2012 Apr 15;28(8):1057. doi: 10.1093/bioinformatics/bts111. Epub 2012 Mar 6. No abstract available.

16.

An Overview of data science uses in bioimage informatics.

Chessel A.

Methods. 2017 Feb 15;115:110-118. doi: 10.1016/j.ymeth.2016.12.014. Epub 2017 Jan 3. Review.

PMID:
28057585
17.

Applications of the pipeline environment for visual informatics and genomics computations.

Dinov ID, Torri F, Macciardi F, Petrosyan P, Liu Z, Zamanyan A, Eggert P, Pierce J, Genco A, Knowles JA, Clark AP, Van Horn JD, Ames J, Kesselman C, Toga AW.

BMC Bioinformatics. 2011 Jul 26;12:304. doi: 10.1186/1471-2105-12-304.

18.

An infrastructure for high-throughput microscopy: instrumentation, informatics, and integration.

Vaisberg EA, Lenzi D, Hansen RL, Keon BH, Finer JT.

Methods Enzymol. 2006;414:484-512. Review.

PMID:
17110208
19.

Automated image computing reshapes computational neuroscience.

Peng H, Roysam B, Ascoli GA.

BMC Bioinformatics. 2013 Oct 4;14:293. doi: 10.1186/1471-2105-14-293.

20.

Machine learning and computer vision approaches for phenotypic profiling.

Grys BT, Lo DS, Sahin N, Kraus OZ, Morris Q, Boone C, Andrews BJ.

J Cell Biol. 2017 Jan 2;216(1):65-71. doi: 10.1083/jcb.201610026. Epub 2016 Dec 9. Review.

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