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Items: 1 to 20 of 717

1.

Structural and functional-annotation of an equine whole genome oligoarray.

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S8. doi: 10.1186/1471-2105-10-S11-S8.

2.

Facilitating functional annotation of chicken microarray data.

Buza TJ, Kumar R, Gresham CR, Burgess SC, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S2. doi: 10.1186/1471-2105-10-S11-S2.

3.

AgBase: a functional genomics resource for agriculture.

McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP, Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC.

BMC Genomics. 2006 Sep 8;7:229.

4.

AgBase: a unified resource for functional analysis in agriculture.

McCarthy FM, Bridges SM, Wang N, Magee GB, Williams WP, Luthe DS, Burgess SC.

Nucleic Acids Res. 2007 Jan;35(Database issue):D599-603. Epub 2006 Nov 29.

5.

GOing from functional genomics to biological significance.

McCarthy FM, Bridges SM, Burgess SC.

Cytogenet Genome Res. 2007;117(1-4):278-87.

PMID:
17675869
6.

Functional modelling of an equine bronchoalveolar lavage fluid proteome provides experimental confirmation and functional annotation of equine genome sequences.

Bright LA, Mujahid N, Nanduri B, McCarthy FM, Costa LR, Burgess SC, Swiderski CE.

Anim Genet. 2011 Aug;42(4):395-405. doi: 10.1111/j.1365-2052.2010.02158.x. Epub 2011 Feb 6.

PMID:
21749422
7.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

8.

AgBase: supporting functional modeling in agricultural organisms.

McCarthy FM, Gresham CR, Buza TJ, Chouvarine P, Pillai LR, Kumar R, Ozkan S, Wang H, Manda P, Arick T, Bridges SM, Burgess SC.

Nucleic Acids Res. 2011 Jan;39(Database issue):D497-506. doi: 10.1093/nar/gkq1115. Epub 2010 Nov 12.

9.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

10.

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays.

van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC.

BMC Bioinformatics. 2009 Jan 23;10:30. doi: 10.1186/1471-2105-10-30.

11.

Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data.

van den Berg BH, Thanthiriwatte C, Manda P, Bridges SM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S9. doi: 10.1186/1471-2105-10-S11-S9.

12.

Snat: a SNP annotation tool for bovine by integrating various sources of genomic information.

Jiang J, Jiang L, Zhou B, Fu W, Liu JF, Zhang Q.

BMC Genet. 2011 Oct 7;12:85. doi: 10.1186/1471-2156-12-85.

13.

A procedure for assessing GO annotation consistency.

Dolan ME, Ni L, Camon E, Blake JA.

Bioinformatics. 2005 Jun;21 Suppl 1:i136-43.

PMID:
15961450
14.

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. doi: 10.1186/1471-2180-9-S1-S8. Review.

15.

A genome-wide 20 K citrus microarray for gene expression analysis.

Martinez-Godoy MA, Mauri N, Juarez J, Marques MC, Santiago J, Forment J, Gadea J.

BMC Genomics. 2008 Jul 3;9:318. doi: 10.1186/1471-2164-9-318.

16.

GOModeler--a tool for hypothesis-testing of functional genomics datasets.

Manda P, Freeman MG, Bridges SM, Jankun-Kelly TJ, Nanduri B, McCarthy FM, Burgess SC.

BMC Bioinformatics. 2010 Oct 7;11 Suppl 6:S29. doi: 10.1186/1471-2105-11-S6-S29.

17.
19.

Re-annotation is an essential step in systems biology modeling of functional genomics data.

van den Berg BH, McCarthy FM, Lamont SJ, Burgess SC.

PLoS One. 2010 May 14;5(5):e10642. doi: 10.1371/journal.pone.0010642.

20.

Gene Ontology annotation quality analysis in model eukaryotes.

Buza TJ, McCarthy FM, Wang N, Bridges SM, Burgess SC.

Nucleic Acids Res. 2008 Feb;36(2):e12. doi: 10.1093/nar/gkm1167. Epub 2008 Jan 10.

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