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Items: 1 to 20 of 136

1.

A robust method for searching the smallest set of smallest rings with a path-included distance matrix.

Lee CJ, Kang YM, Cho KH, No KT.

Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17355-8. doi: 10.1073/pnas.0813040106. Erratum in: Proc Natl Acad Sci U S A. 2009 Nov 17;106(46):19629.

2.

Scoredist: a simple and robust protein sequence distance estimator.

Sonnhammer EL, Hollich V.

BMC Bioinformatics. 2005 Apr 27;6:108.

3.

Generalizing Swendsen-Wang to sampling arbitrary posterior probabilities.

Barbu A, Zhu SC.

IEEE Trans Pattern Anal Mach Intell. 2005 Aug;27(8):1239-53.

PMID:
16119263
4.

Improved algorithms for enumerating tree-like chemical graphs with given path frequency.

Ishida Y, Zhao L, Nagamochi H, Akutsu T.

Genome Inform. 2008;21:53-64.

5.

Evaluation of clustering algorithms for protein-protein interaction networks.

Brohée S, van Helden J.

BMC Bioinformatics. 2006 Nov 6;7:488.

7.

ProClust: improved clustering of protein sequences with an extended graph-based approach.

Pipenbacher P, Schliep A, Schneckener S, Schönhuth A, Schomburg D, Schrader R.

Bioinformatics. 2002;18 Suppl 2:S182-91.

8.

Dynamic graph cuts for efficient inference in Markov Random Fields.

Kohli P, Torr PH.

IEEE Trans Pattern Anal Mach Intell. 2007 Dec;29(12):2079-88.

PMID:
17934219
9.

Spectral embedding finds meaningful (relevant) structure in image and microarray data.

Higgs BW, Weller J, Solka JL.

BMC Bioinformatics. 2006 Feb 16;7:74.

10.

Graph edit distance from spectral seriation.

Robles-Kelly A, Hancock ER.

IEEE Trans Pattern Anal Mach Intell. 2005 Mar;27(3):365-78.

PMID:
15747792
11.

Combining Monte Carlo and mean-field-like methods for inference in hidden Markov random fields.

Forbes F, Fort G.

IEEE Trans Image Process. 2007 Mar;16(3):824-37.

PMID:
17357740
12.

TopoLayout: multilevel graph layout by topological features.

Archambault D, Munzner T, Auber D.

IEEE Trans Vis Comput Graph. 2007 Mar-Apr;13(2):305-17.

PMID:
17218747
13.

Pattern vectors from algebraic graph theory.

Wilson RC, Hancock ER, Luo B.

IEEE Trans Pattern Anal Mach Intell. 2005 Jul;27(7):1112-24.

PMID:
16013758
14.

Ordering and finding the best of K > 2 supervised learning algorithms.

Yildiz OT, Alpaydin E.

IEEE Trans Pattern Anal Mach Intell. 2006 Mar;28(3):392-402.

PMID:
16526425
15.

HYPLOSP: a knowledge-based approach to protein local structure prediction.

Chen CT, Lin HN, Sung TY, Hsu WL.

J Bioinform Comput Biol. 2006 Dec;4(6):1287-307.

PMID:
17245815
16.

Designing patterns for profile HMM search.

Sun Y, Buhler J.

Bioinformatics. 2007 Jan 15;23(2):e36-43.

17.

A binary linear programming formulation of the graph edit distance.

Justice D, Hero A.

IEEE Trans Pattern Anal Mach Intell. 2006 Aug;28(8):1200-14.

PMID:
16886857
18.

HMM sampling and applications to gene finding and alternative splicing.

Cawley SL, Pachter L.

Bioinformatics. 2003 Oct;19 Suppl 2:ii36-41.

19.

A (sub)graph isomorphism algorithm for matching large graphs.

Cordella LP, Foggia P, Sansone C, Vento M.

IEEE Trans Pattern Anal Mach Intell. 2004 Oct;26(10):1367-72.

PMID:
15641723
20.

A recursive model-reduction method for approximate inference in Gaussian Markov random fields.

Johnson JK, Willsky AS.

IEEE Trans Image Process. 2008 Jan;17(1):70-83.

PMID:
18229805
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