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Items: 1 to 20 of 168

1.

Biased coarse-grained molecular dynamics simulation approach for flexible fitting of X-ray structure into cryo electron microscopy maps.

Grubisic I, Shokhirev MN, Orzechowski M, Miyashita O, Tama F.

J Struct Biol. 2010 Jan;169(1):95-105. doi: 10.1016/j.jsb.2009.09.010. Epub 2009 Oct 2.

PMID:
19800974
2.

Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

Tama F, Miyashita O, Brooks CL 3rd.

J Struct Biol. 2004 Sep;147(3):315-26.

PMID:
15450300
3.
4.

Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics simulations.

Orzechowski M, Tama F.

Biophys J. 2008 Dec 15;95(12):5692-705. doi: 10.1529/biophysj.108.139451. Epub 2008 Oct 10.

7.

Fitting atomic models into electron-microscopy maps.

Rossmann MG.

Acta Crystallogr D Biol Crystallogr. 2000 Oct;56(Pt 10):1341-9.

PMID:
10998631
8.
9.

A core-weighted fitting method for docking atomic structures into low-resolution maps: application to cryo-electron microscopy.

Wu X, Milne JL, Borgnia MJ, Rostapshov AV, Subramaniam S, Brooks BR.

J Struct Biol. 2003 Jan;141(1):63-76.

PMID:
12576021
10.
11.

High-resolution modeling of protein structures based on flexible fitting of low-resolution structural data.

Zheng W, Tekpinar M.

Adv Protein Chem Struct Biol. 2014;96:267-84. doi: 10.1016/bs.apcsb.2014.06.004. Epub 2014 Aug 24. Review.

PMID:
25443961
12.

Conformational changes studied by cryo-electron microscopy.

Saibil HR.

Nat Struct Biol. 2000 Sep;7(9):711-4. Review.

PMID:
10966635
14.
15.

The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.

Mueller F, Sommer I, Baranov P, Matadeen R, Stoldt M, Wöhnert J, Görlach M, van Heel M, Brimacombe R.

J Mol Biol. 2000 Apr 21;298(1):35-59.

PMID:
10756104
16.

The SAXS solution structure of RF1 differs from its crystal structure and is similar to its ribosome bound cryo-EM structure.

Vestergaard B, Sanyal S, Roessle M, Mora L, Buckingham RH, Kastrup JS, Gajhede M, Svergun DI, Ehrenberg M.

Mol Cell. 2005 Dec 22;20(6):929-38.

18.

Finding rigid bodies in protein structures: Application to flexible fitting into cryoEM maps.

Pandurangan AP, Topf M.

J Struct Biol. 2012 Feb;177(2):520-31. doi: 10.1016/j.jsb.2011.10.011. Epub 2011 Nov 7.

PMID:
22079400
19.

When two into one won't go: fitting in the presence of steric hindrance and partial occupancy.

Thouvenin E, Hewat E.

Acta Crystallogr D Biol Crystallogr. 2000 Oct;56(Pt 10):1350-7.

PMID:
10998632
20.

The 13 angstroms structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy.

Falke S, Tama F, Brooks CL 3rd, Gogol EP, Fisher MT.

J Mol Biol. 2005 Apr 22;348(1):219-30.

PMID:
15808865

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