Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 91

1.

Clinical diagnostics in human genetics with semantic similarity searches in ontologies.

Köhler S, Schulz MH, Krawitz P, Bauer S, Dölken S, Ott CE, Mundlos C, Horn D, Mundlos S, Robinson PN.

Am J Hum Genet. 2009 Oct;85(4):457-64. doi: 10.1016/j.ajhg.2009.09.003.

2.

The human phenotype ontology.

Robinson PN, Mundlos S.

Clin Genet. 2010 Jun;77(6):525-34. doi: 10.1111/j.1399-0004.2010.01436.x. Epub 2010 Feb 11. Review.

PMID:
20412080
3.

The Human Phenotype Ontology: a tool for annotating and analyzing human hereditary disease.

Robinson PN, Köhler S, Bauer S, Seelow D, Horn D, Mundlos S.

Am J Hum Genet. 2008 Nov;83(5):610-5. doi: 10.1016/j.ajhg.2008.09.017. Epub 2008 Oct 23.

4.

GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists.

Masseroli M, Galati O, Pinciroli F.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W717-23.

5.

Ontological phenotype standards for neurogenetics.

Köhler S, Doelken SC, Rath A, Aymé S, Robinson PN.

Hum Mutat. 2012 Sep;33(9):1333-9. doi: 10.1002/humu.22112. Epub 2012 Jul 2.

PMID:
22573485
6.

Exact score distribution computation for ontological similarity searches.

Schulz MH, Köhler S, Bauer S, Robinson PN.

BMC Bioinformatics. 2011 Nov 12;12:441. doi: 10.1186/1471-2105-12-441.

7.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

8.

Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge.

Gudivada RC, Qu XA, Chen J, Jegga AG, Neumann EK, Aronow BJ.

J Biomed Inform. 2008 Oct;41(5):717-29. doi: 10.1016/j.jbi.2008.07.004. Epub 2008 Aug 23.

9.

HPOSim: an R package for phenotypic similarity measure and enrichment analysis based on the human phenotype ontology.

Deng Y, Gao L, Wang B, Guo X.

PLoS One. 2015 Feb 9;10(2):e0115692. doi: 10.1371/journal.pone.0115692. eCollection 2015.

10.

A new web-based data mining tool for the identification of candidate genes for human genetic disorders.

van Driel MA, Cuelenaere K, Kemmeren PP, Leunissen JA, Brunner HG.

Eur J Hum Genet. 2003 Jan;11(1):57-63.

11.

A new method to measure the semantic similarity of GO terms.

Wang JZ, Du Z, Payattakool R, Yu PS, Chen CF.

Bioinformatics. 2007 May 15;23(10):1274-81. Epub 2007 Mar 7.

PMID:
17344234
12.

Clinical phenotype-based gene prioritization: an initial study using semantic similarity and the human phenotype ontology.

Masino AJ, Dechene ET, Dulik MC, Wilkens A, Spinner NB, Krantz ID, Pennington JW, Robinson PN, White PS.

BMC Bioinformatics. 2014 Jul 21;15:248. doi: 10.1186/1471-2105-15-248.

13.

GS2: an efficiently computable measure of GO-based similarity of gene sets.

Ruths T, Ruths D, Nakhleh L.

Bioinformatics. 2009 May 1;25(9):1178-84. doi: 10.1093/bioinformatics/btp128. Epub 2009 Mar 16.

14.

Gene Ontology term overlap as a measure of gene functional similarity.

Mistry M, Pavlidis P.

BMC Bioinformatics. 2008 Aug 4;9:327. doi: 10.1186/1471-2105-9-327.

15.

Genome-wide identification of genes likely to be involved in human genetic disease.

López-Bigas N, Ouzounis CA.

Nucleic Acids Res. 2004 Jun 4;32(10):3108-14. Print 2004.

16.

GeneSeeker: extraction and integration of human disease-related information from web-based genetic databases.

van Driel MA, Cuelenaere K, Kemmeren PP, Leunissen JA, Brunner HG, Vriend G.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W758-61.

17.

SoyBase, the USDA-ARS soybean genetics and genomics database.

Grant D, Nelson RT, Cannon SB, Shoemaker RC.

Nucleic Acids Res. 2010 Jan;38(Database issue):D843-6. doi: 10.1093/nar/gkp798. Epub 2009 Dec 14.

18.

Improving the measurement of semantic similarity between gene ontology terms and gene products: insights from an edge- and IC-based hybrid method.

Wu X, Pang E, Lin K, Pei ZM.

PLoS One. 2013 May 31;8(5):e66745. doi: 10.1371/journal.pone.0066745. Print 2013.

19.

Orymold: ontology based gene expression data integration and analysis tool applied to rice.

Mercadé J, Espinosa A, Adsuara JE, Adrados R, Segura J, Maes T.

BMC Bioinformatics. 2009 May 23;10:158. doi: 10.1186/1471-2105-10-158.

20.

Constructing a gene semantic similarity network for the inference of disease genes.

Jiang R, Gan M, He P.

BMC Syst Biol. 2011;5 Suppl 2:S2. doi: 10.1186/1752-0509-5-S2-S2. Epub 2011 Dec 14.

Supplemental Content

Support Center