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Items: 1 to 20 of 97

1.

Exploration of uncharted regions of the protein universe.

Jaroszewski L, Li Z, Krishna SS, Bakolitsa C, Wooley J, Deacon AM, Wilson IA, Godzik A.

PLoS Biol. 2009 Sep;7(9):e1000205. doi: 10.1371/journal.pbio.1000205. Epub 2009 Sep 29.

2.

NMR in structural genomics to increase structural coverage of the protein universe: Delivered by Prof. Kurt Wüthrich on 7 July 2013 at the 38th FEBS Congress in St. Petersburg, Russia.

Serrano P, Dutta SK, Proudfoot A, Mohanty B, Susac L, Martin B, Geralt M, Jaroszewski L, Godzik A, Elsliger M, Wilson IA, Wüthrich K.

FEBS J. 2016 Nov;283(21):3870-3881. doi: 10.1111/febs.13751. Epub 2016 Jun 9.

PMID:
27154589
3.

Nature of the protein universe.

Levitt M.

Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11079-84. doi: 10.1073/pnas.0905029106. Epub 2009 Jun 18.

4.
5.

De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods.

Mudgal R, Sandhya S, Chandra N, Srinivasan N.

Biol Direct. 2015 Jul 31;10:38. doi: 10.1186/s13062-015-0069-2.

6.

A comprehensive update of the sequence and structure classification of kinases.

Cheek S, Ginalski K, Zhang H, Grishin NV.

BMC Struct Biol. 2005 Mar 16;5:6.

7.

The size distribution of protein families within different types of folds.

Liu X, Lv B, Guo W.

Biochem Biophys Res Commun. 2011 Mar 11;406(2):218-22. doi: 10.1016/j.bbrc.2011.02.020. Epub 2011 Feb 15.

PMID:
21303659
9.

The structure of DinB from Geobacillus stearothermophilus: a representative of a unique four-helix-bundle superfamily.

Cooper DR, Grelewska K, Kim CY, Joachimiak A, Derewenda ZS.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Mar 1;66(Pt 3):219-24. doi: 10.1107/S1744309109053913. Epub 2010 Feb 23.

10.

Protein folds: molecular systematics in three dimensions.

Zhang C, DeLisi C.

Cell Mol Life Sci. 2001 Jan;58(1):72-9. Review.

PMID:
11229818
11.

Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes.

Burroughs AM, Allen KN, Dunaway-Mariano D, Aravind L.

J Mol Biol. 2006 Sep 1;361(5):1003-34. Epub 2006 Jul 7.

PMID:
16889794
12.

Expectations from structural genomics revisited: an analysis of structural genomics targets.

Saqi MA, Wild DL.

Am J Pharmacogenomics. 2005;5(5):339-42.

PMID:
16196503
13.

Atomic interaction networks in the core of protein domains and their native folds.

Soundararajan V, Raman R, Raguram S, Sasisekharan V, Sasisekharan R.

PLoS One. 2010 Feb 23;5(2):e9391. doi: 10.1371/journal.pone.0009391.

14.

The PAS fold. A redefinition of the PAS domain based upon structural prediction.

Hefti MH, Françoijs KJ, de Vries SC, Dixon R, Vervoort J.

Eur J Biochem. 2004 Mar;271(6):1198-208.

PMID:
15009198
15.

The challenge of increasing Pfam coverage of the human proteome.

Mistry J, Coggill P, Eberhardt RY, Deiana A, Giansanti A, Finn RD, Bateman A, Punta M.

Database (Oxford). 2013 Apr 19;2013:bat023. doi: 10.1093/database/bat023. Print 2013.

16.

Structure-based functional inference in structural genomics.

Kim SH, Shin DH, Choi IG, Schulze-Gahmen U, Chen S, Kim R.

J Struct Funct Genomics. 2003;4(2-3):129-35. Review.

PMID:
14649297
17.

An estimated 5% of new protein structures solved today represent a new Pfam family.

Mistry J, Kloppmann E, Rost B, Punta M.

Acta Crystallogr D Biol Crystallogr. 2013 Nov;69(Pt 11):2186-93. doi: 10.1107/S0907444913027157. Epub 2013 Oct 12.

18.
19.

Representing and comparing protein folds and fold families using three-dimensional shape-density representations.

Mavridis L, Ghoorah AW, Venkatraman V, Ritchie DW.

Proteins. 2012 Feb;80(2):530-45. doi: 10.1002/prot.23218. Epub 2011 Nov 12.

PMID:
22081520
20.

Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches.

Knizewski L, Kinch LN, Grishin NV, Rychlewski L, Ginalski K.

BMC Struct Biol. 2007 Jun 20;7:40.

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