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Items: 1 to 20 of 97

1.

Evaluating the accuracy of a functional SNP annotation system.

Shen TH, Carlson CS, Tarczy-Hornoch P.

BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S11. doi: 10.1186/1471-2105-10-S9-S11.

2.

SNPit: a federated data integration system for the purpose of functional SNP annotation.

Shen TH, Carlson CS, Tarczy-Hornoch P.

Comput Methods Programs Biomed. 2009 Aug;95(2):181-9. doi: 10.1016/j.cmpb.2009.02.010. Epub 2009 Mar 26.

3.

An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases.

Yang JO, Hwang S, Oh J, Bhak J, Sohn TK.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S19. doi: 10.1186/1471-2105-9-S12-S19.

4.

pfSNP: An integrated potentially functional SNP resource that facilitates hypotheses generation through knowledge syntheses.

Wang J, Ronaghi M, Chong SS, Lee CG.

Hum Mutat. 2011 Jan;32(1):19-24. doi: 10.1002/humu.21331.

PMID:
20672376
5.

LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs.

Wang MC, Chen FC, Chen YZ, Huang YT, Chuang TJ.

BMC Res Notes. 2012 May 2;5:212. doi: 10.1186/1756-0500-5-212.

6.

Gene Prospector: an evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases.

Yu W, Wulf A, Liu T, Khoury MJ, Gwinn M.

BMC Bioinformatics. 2008 Dec 8;9:528. doi: 10.1186/1471-2105-9-528.

7.

Computational prediction of the effects of non-synonymous single nucleotide polymorphisms in human DNA repair genes.

Nakken S, Alseth I, Rognes T.

Neuroscience. 2007 Apr 14;145(4):1273-9. Epub 2006 Oct 19. Review.

PMID:
17055652
8.

SNP-VISTA: an interactive SNP visualization tool.

Shah N, Teplitsky MV, Minovitsky S, Pennacchio LA, Hugenholtz P, Hamann B, Dubchak IL.

BMC Bioinformatics. 2005 Dec 8;6:292.

9.

GWAS analyzer: integrating genotype, phenotype and public annotation data for genome-wide association study analysis.

Fong C, Ko DC, Wasnick M, Radey M, Miller SI, Brittnacher M.

Bioinformatics. 2010 Feb 15;26(4):560-4. doi: 10.1093/bioinformatics/btp714. Epub 2010 Jan 6.

10.

Disease associated cytokine SNPs database: an annotation and dissemination model.

Bhushan S, Perumal NB.

Cytokine. 2012 Jan;57(1):107-12. doi: 10.1016/j.cyto.2011.10.009. Epub 2011 Nov 10.

PMID:
22079417
11.

A structural bioinformatics approach to the analysis of nonsynonymous single nucleotide polymorphisms (nsSNPs) and their relation to disease.

Worth CL, Bickerton GR, Schreyer A, Forman JR, Cheng TM, Lee S, Gong S, Burke DF, Blundell TL.

J Bioinform Comput Biol. 2007 Dec;5(6):1297-318.

PMID:
18172930
12.

FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases.

Goodswen SJ, Gondro C, Watson-Haigh NS, Kadarmideen HN.

BMC Bioinformatics. 2010 Jun 9;11:311. doi: 10.1186/1471-2105-11-311.

13.

Identification and in silico analysis of functional SNPs of the BRCA1 gene.

Rajasekaran R, Sudandiradoss C, Doss CG, Sethumadhavan R.

Genomics. 2007 Oct;90(4):447-52. Epub 2007 Aug 27.

14.

A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms.

Sachidanandam R, Weissman D, Schmidt SC, Kakol JM, Stein LD, Marth G, Sherry S, Mullikin JC, Mortimore BJ, Willey DL, Hunt SE, Cole CG, Coggill PC, Rice CM, Ning Z, Rogers J, Bentley DR, Kwok PY, Mardis ER, Yeh RT, Schultz B, Cook L, Davenport R, Dante M, Fulton L, Hillier L, Waterston RH, McPherson JD, Gilman B, Schaffner S, Van Etten WJ, Reich D, Higgins J, Daly MJ, Blumenstiel B, Baldwin J, Stange-Thomann N, Zody MC, Linton L, Lander ES, Altshuler D; International SNP Map Working Group..

Nature. 2001 Feb 15;409(6822):928-33.

PMID:
11237013
15.

Application of machine learning in SNP discovery.

Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

BMC Bioinformatics. 2006 Jan 6;7:4.

17.

SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays.

Hua J, Craig DW, Brun M, Webster J, Zismann V, Tembe W, Joshipura K, Huentelman MJ, Dougherty ER, Stephan DA.

Bioinformatics. 2007 Jan 1;23(1):57-63. Epub 2006 Oct 24.

PMID:
17062589
18.
19.

HaploSNPer: a web-based allele and SNP detection tool.

Tang J, Leunissen JA, Voorrips RE, van der Linden CG, Vosman B.

BMC Genet. 2008 Feb 28;9:23. doi: 10.1186/1471-2156-9-23.

20.

A gentle introduction to SNP analysis: resources and tools.

Mah JT, Chia KS.

J Bioinform Comput Biol. 2007 Oct;5(5):1123-38.

PMID:
17933014

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