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Items: 1 to 20 of 463


An integrated approach to the interpretation of single amino acid polymorphisms within the framework of CATH and Gene3D.

Izarzugaza JM, Baresic A, McMillan LE, Yeats C, Clegg AB, Orengo CA, Martin AC, Valencia A.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S5. doi: 10.1186/1471-2105-10-S8-S5.


The SAAPdb web resource: a large-scale structural analysis of mutant proteins.

Hurst JM, McMillan LE, Porter CT, Allen J, Fakorede A, Martin AC.

Hum Mutat. 2009 Apr;30(4):616-24. doi: 10.1002/humu.20898.


Gene3D: structural assignments for the biologist and bioinformaticist alike.

Buchan DW, Rison SC, Bray JE, Lee D, Pearl F, Thornton JM, Orengo CA.

Nucleic Acids Res. 2003 Jan 1;31(1):469-73.


The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.

Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D247-51.


Gene3D: comprehensive structural and functional annotation of genomes.

Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C.

Nucleic Acids Res. 2008 Jan;36(Database issue):D414-8. Epub 2007 Nov 21.


The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2007 Oct 18;8:401.


MutDB services: interactive structural analysis of mutation data.

Dantzer J, Moad C, Heiland R, Mooney S.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W311-4.


Selecting targets for structural determination by navigating in a graph of protein families.

Portugaly E, Kifer I, Linial M.

Bioinformatics. 2002 Jul;18(7):899-907.


Structural diversity of domain superfamilies in the CATH database.

Reeves GA, Dallman TJ, Redfern OC, Akpor A, Orengo CA.

J Mol Biol. 2006 Jul 14;360(3):725-41. Epub 2006 Jun 2.


Identification and distribution of protein families in 120 completed genomes using Gene3D.

Lee D, Grant A, Marsden RL, Orengo C.

Proteins. 2005 May 15;59(3):603-15.


Mapping SNPs to protein sequence and structure data.

Cavallo A, Martin AC.

Bioinformatics. 2005 Apr 15;21(8):1443-50. Epub 2004 Dec 21.


PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.


The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.

Greene LH, Lewis TE, Addou S, Cuff A, Dallman T, Dibley M, Redfern O, Pearl F, Nambudiry R, Reid A, Sillitoe I, Yeats C, Thornton JM, Orengo CA.

Nucleic Acids Res. 2007 Jan;35(Database issue):D291-7. Epub 2006 Nov 29.


The ProDom database of protein domain families: more emphasis on 3D.

Bru C, Courcelle E, Carrère S, Beausse Y, Dalmar S, Kahn D.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D212-5.


coliSNP database server mapping nsSNPs on protein structures.

Kono H, Yuasa T, Nishiue S, Yura K.

Nucleic Acids Res. 2008 Jan;36(Database issue):D409-13. Epub 2007 Oct 5.


The Protein Mutant Database.

Kawabata T, Ota M, Nishikawa K.

Nucleic Acids Res. 1999 Jan 1;27(1):355-7.


Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database.

Buchan DW, Shepherd AJ, Lee D, Pearl FM, Rison SC, Thornton JM, Orengo CA.

Genome Res. 2002 Mar;12(3):503-14.


ProtRepeatsDB: a database of amino acid repeats in genomes.

Kalita MK, Ramasamy G, Duraisamy S, Chauhan VS, Gupta D.

BMC Bioinformatics. 2006 Jul 7;7:336.


Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases.

Reumers J, Conde L, Medina I, Maurer-Stroh S, Van Durme J, Dopazo J, Rousseau F, Schymkowitz J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D825-9. Epub 2007 Dec 17.

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