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Items: 1 to 20 of 99

1.

In Silico screening for functional candidates amongst hypothetical proteins.

Desler C, Suravajhala P, Sanderhoff M, Rasmussen M, Rasmussen LJ.

BMC Bioinformatics. 2009 Sep 16;10:289. doi: 10.1186/1471-2105-10-289.

2.

Genome-wide screens for expressed hypothetical proteins.

Desler C, Durhuus JA, Rasmussen LJ.

Methods Mol Biol. 2012;815:25-38. doi: 10.1007/978-1-61779-424-7_3.

PMID:
22130981
3.

Direct detection of alternative open reading frames translation products in human significantly expands the proteome.

Vanderperre B, Lucier JF, Bissonnette C, Motard J, Tremblay G, Vanderperre S, Wisztorski M, Salzet M, Boisvert FM, Roucou X.

PLoS One. 2013 Aug 12;8(8):e70698. doi: 10.1371/journal.pone.0070698. eCollection 2013.

4.

Integrating forward and reverse proteomics to unravel protein function.

Palcy S, Chevet E.

Proteomics. 2006 Oct;6(20):5467-80. Review.

PMID:
17044000
5.

Detection of hypothetical proteins in human fetal perireticular nucleus.

Hepner F, Myung JK, Ulfig N, Pollak A, Lubec G.

J Proteome Res. 2005 Nov-Dec;4(6):2379-85.

PMID:
16335990
6.

Application of a subtractive genomics approach for in silico identification and characterization of novel drug targets in Mycobacterium tuberculosis F11.

Hosen MI, Tanmoy AM, Mahbuba DA, Salma U, Nazim M, Islam MT, Akhteruzzaman S.

Interdiscip Sci. 2014 Mar;6(1):48-56. doi: 10.1007/s12539-014-0188-y. Epub 2014 Jan 28.

PMID:
24464704
7.

pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana.

Baerenfaller K, Hirsch-Hoffmann M, Svozil J, Hull R, Russenberger D, Bischof S, Lu Q, Gruissem W, Baginsky S.

Integr Biol (Camb). 2011 Mar;3(3):225-37. doi: 10.1039/c0ib00078g. Epub 2011 Jan 24.

PMID:
21264403
8.

Annotation of hypothetical proteins orthologous in Pongo abelii and Sus scrofa.

Jitendra S, Narula R, Agnihotri S, Singh M.

Bioinformation. 2011;6(8):297-9. Epub 2011 Jul 6.

9.

Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism.

Stekhoven DJ, Omasits U, Quebatte M, Dehio C, Ahrens CH.

J Proteomics. 2014 Mar 17;99:123-37. doi: 10.1016/j.jprot.2014.01.015. Epub 2014 Jan 28.

PMID:
24486812
11.

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Crappé J, Ndah E, Koch A, Steyaert S, Gawron D, De Keulenaer S, De Meester E, De Meyer T, Van Criekinge W, Van Damme P, Menschaert G.

Nucleic Acids Res. 2015 Mar 11;43(5):e29. doi: 10.1093/nar/gku1283. Epub 2014 Dec 15.

12.

Proteomic and bioinformatic analysis of a nuclear intrinsically disordered proteome.

Skupien-Rabian B, Jankowska U, Swiderska B, Lukasiewicz S, Ryszawy D, Dziedzicka-Wasylewska M, Kedracka-Krok S.

J Proteomics. 2016 Jan 1;130:76-84. doi: 10.1016/j.jprot.2015.09.004. Epub 2015 Sep 12.

PMID:
26376097
13.

Compositional complexity of the mitochondrial proteome of a unicellular eukaryote (Acanthamoeba castellanii, supergroup Amoebozoa) rivals that of animals, fungi, and plants.

Gawryluk RM, Chisholm KA, Pinto DM, Gray MW.

J Proteomics. 2014 Sep 23;109:400-16. doi: 10.1016/j.jprot.2014.07.005. Epub 2014 Jul 12.

PMID:
25026440
14.

PCHM: A bioinformatic resource for high-throughput human mitochondrial proteome searching and comparison.

Kim T, Kim E, Park SJ, Joo H.

Comput Biol Med. 2009 Aug;39(8):689-96. doi: 10.1016/j.compbiomed.2009.05.006. Epub 2009 Jun 21.

PMID:
19541297
16.

PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset.

Kikugawa S, Nishikata K, Murakami K, Sato Y, Suzuki M, Altaf-Ul-Amin M, Kanaya S, Imanishi T.

BMC Syst Biol. 2012;6 Suppl 2:S7. doi: 10.1186/1752-0509-6-S2-S7. Epub 2012 Dec 12.

17.

Large-scale analysis of thermostable, mammalian proteins provides insights into the intrinsically disordered proteome.

Galea CA, High AA, Obenauer JC, Mishra A, Park CG, Punta M, Schlessinger A, Ma J, Rost B, Slaughter CA, Kriwacki RW.

J Proteome Res. 2009 Jan;8(1):211-26. doi: 10.1021/pr800308v.

18.

Identification of genes encoding hypothetical proteins in open-reading frame expressed sequence tags from mammalian stages of Trypanosoma cruzi.

Martins C, Reis-Cunha JL, Silva MN, Pereira EG, Pappas GJ Jr, Bartholomeu DC, Zingales B.

Genet Mol Res. 2011;10(3):1589-630. doi: 10.4238/vol10-3gmr1140.

19.

An overview of human protein databases and their application to functional proteomics in health and disease.

Zhang Y, Zhu Y, He F.

Sci China Life Sci. 2011 Nov;54(11):988-98. doi: 10.1007/s11427-011-4247-x. Epub 2011 Dec 16. Review.

PMID:
22173304
20.

Predicting proteomes of mitochondria and related organelles from genomic and expressed sequence tag data.

Gaston D, Tsaousis AD, Roger AJ.

Methods Enzymol. 2009;457:21-47. doi: 10.1016/S0076-6879(09)05002-2. Review.

PMID:
19426860

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