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Items: 1 to 20 of 73

1.

Genome-wide identification of post-translational modulators of transcription factor activity in human B cells.

Wang K, Saito M, Bisikirska BC, Alvarez MJ, Lim WK, Rajbhandari P, Shen Q, Nemenman I, Basso K, Margolin AA, Klein U, Dalla-Favera R, Califano A.

Nat Biotechnol. 2009 Sep;27(9):829-39. doi: 10.1038/nbt.1563. Epub 2009 Sep 9.

2.

Transcriptional deregulation of oncogenic myocyte enhancer factor 2C in T-cell acute lymphoblastic leukemia.

Nagel S, Venturini L, Meyer C, Kaufmann M, Scherr M, Drexler HG, Macleod RA.

Leuk Lymphoma. 2011 Feb;52(2):290-7. doi: 10.3109/10428194.2010.537003. Epub 2011 Jan 24.

PMID:
21261500
3.

Genome-wide dissection of posttranscriptional and posttranslational interactions.

Bansal M, Califano A.

Methods Mol Biol. 2012;786:131-49. doi: 10.1007/978-1-61779-292-2_8.

PMID:
21938624
4.

Association with class IIa histone deacetylases upregulates the sumoylation of MEF2 transcription factors.

Grégoire S, Yang XJ.

Mol Cell Biol. 2005 Mar;25(6):2273-87. Erratum in: Mol Cell Biol. 2006 Apr;26(8):3335.

5.

Dissecting the interface between signaling and transcriptional regulation in human B cells.

Wang K, Alvarez MJ, Bisikirska BC, Linding R, Basso K, Dalla Favera R, Califano A.

Pac Symp Biocomput. 2009:264-75.

6.

Role of salt-inducible kinase 1 in the activation of MEF2-dependent transcription by BDNF.

Finsterwald C, Carrard A, Martin JL.

PLoS One. 2013;8(1):e54545. doi: 10.1371/journal.pone.0054545. Epub 2013 Jan 22.

7.

A new statistical model to select target sequences bound by transcription factors.

Pape UJ, Grossmann S, Hammer S, Sperling S, Vingron M.

Genome Inform. 2006;17(1):134-40.

PMID:
17503363
8.

Dephosphorylation and caspase processing generate distinct nuclear pools of histone deacetylase 4.

Paroni G, Fontanini A, Cernotta N, Foti C, Gupta MP, Yang XJ, Fasino D, Brancolini C.

Mol Cell Biol. 2007 Oct;27(19):6718-32. Epub 2007 Jul 16.

9.

STK38 is a critical upstream regulator of MYC's oncogenic activity in human B-cell lymphoma.

Bisikirska BC, Adam SJ, Alvarez MJ, Rajbhandari P, Cox R, Lefebvre C, Wang K, Rieckhof GE, Felsher DW, Califano A.

Oncogene. 2013 Nov 7;32(45):5283-91. doi: 10.1038/onc.2012.543. Epub 2012 Nov 26.

10.

Stat3 and c-Myc genome-wide promoter occupancy in embryonic stem cells.

Kidder BL, Yang J, Palmer S.

PLoS One. 2008;3(12):e3932. doi: 10.1371/journal.pone.0003932. Epub 2008 Dec 11.

11.

A reverse-engineering approach to dissect post-translational modulators of transcription factor's activity from transcriptional data.

Gambardella G, Peluso I, Montefusco S, Bansal M, Medina DL, Lawrence N, di Bernardo D.

BMC Bioinformatics. 2015 Sep 3;16:279. doi: 10.1186/s12859-015-0700-3.

12.

Casein kinase II increases the transcriptional activities of MRF4 and MyoD independently of their direct phosphorylation.

Johnson SE, Wang X, Hardy S, Taparowsky EJ, Konieczny SF.

Mol Cell Biol. 1996 Apr;16(4):1604-13.

13.

A dynamic exchange of TCF3 and TCF4 transcription factors controls MYC expression in colorectal cancer cells.

Shah M, Rennoll SA, Raup-Konsavage WM, Yochum GS.

Cell Cycle. 2015;14(3):323-32. doi: 10.4161/15384101.2014.980643.

14.

Post-translational control of the MEF2A transcriptional regulatory protein.

Ornatsky OI, Cox DM, Tangirala P, Andreucci JJ, Quinn ZA, Wrana JL, Prywes R, Yu YT, McDermott JC.

Nucleic Acids Res. 1999 Jul 1;27(13):2646-54.

15.

Identification of Post-Transcriptional Modulators of Breast Cancer Transcription Factor Activity Using MINDy.

Campbell TM, Castro MA, Ponder BA, Meyer KB.

PLoS One. 2016 Dec 20;11(12):e0168770. doi: 10.1371/journal.pone.0168770. eCollection 2016.

16.

Regulation of transcription factors c-Myc, Max, and c-Myb by casein kinase II.

Bousset K, Oelgeschläger MH, Henriksson M, Schreek S, Burkhardt H, Litchfield DW, Lüscher-Firzlaff JM, Lüscher B.

Cell Mol Biol Res. 1994;40(5-6):501-11.

PMID:
7735324
17.

TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information.

Liu Q, Tan Y, Huang T, Ding G, Tu Z, Liu L, Li Y, Dai H, Xie L.

BMC Bioinformatics. 2010 Dec 14;11 Suppl 11:S5. doi: 10.1186/1471-2105-11-S11-S5.

18.

Regulation of MYB and bHLH transcription factors: a glance at the protein level.

Pireyre M, Burow M.

Mol Plant. 2015 Mar;8(3):378-88. doi: 10.1016/j.molp.2014.11.022. Epub 2014 Dec 25. Review.

19.
20.

Mef2C is a lineage-restricted target of Scl/Tal1 and regulates megakaryopoiesis and B-cell homeostasis.

Gekas C, Rhodes KE, Gereige LM, Helgadottir H, Ferrari R, Kurdistani SK, Montecino-Rodriguez E, Bassel-Duby R, Olson E, Krivtsov AV, Armstrong S, Orkin SH, Pellegrini M, Mikkola HK.

Blood. 2009 Apr 9;113(15):3461-71. doi: 10.1182/blood-2008-07-167577. Epub 2009 Feb 11.

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