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Items: 1 to 20 of 167

1.

ANCHOR: web server for predicting protein binding regions in disordered proteins.

Dosztányi Z, Mészáros B, Simon I.

Bioinformatics. 2009 Oct 15;25(20):2745-6. doi: 10.1093/bioinformatics/btp518. Epub 2009 Aug 28.

2.

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.

Terribilini M, Sander JD, Lee JH, Zaback P, Jernigan RL, Honavar V, Dobbs D.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W578-84. Epub 2007 May 5.

3.

PrDOS: prediction of disordered protein regions from amino acid sequence.

Ishida T, Kinoshita K.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W460-4. Epub 2007 Jun 12.

4.

FoldUnfold: web server for the prediction of disordered regions in protein chain.

Galzitskaya OV, Garbuzynskiy SO, Lobanov MY.

Bioinformatics. 2006 Dec 1;22(23):2948-9. Epub 2006 Oct 4.

PMID:
17021161
5.

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence.

Lippi M, Passerini A, Punta M, Rost B, Frasconi P.

Bioinformatics. 2008 Sep 15;24(18):2094-5. doi: 10.1093/bioinformatics/btn371. Epub 2008 Jul 16.

6.

PSSM-based prediction of DNA binding sites in proteins.

Ahmad S, Sarai A.

BMC Bioinformatics. 2005 Feb 19;6:33.

7.

PROMALS web server for accurate multiple protein sequence alignments.

Pei J, Kim BH, Tang M, Grishin NV.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W649-52. Epub 2007 Apr 22.

8.

Prediction of protein binding regions in disordered proteins.

Mészáros B, Simon I, Dosztányi Z.

PLoS Comput Biol. 2009 May;5(5):e1000376. doi: 10.1371/journal.pcbi.1000376. Epub 2009 May 1.

9.

PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence.

Li ZR, Lin HH, Han LY, Jiang L, Chen X, Chen YZ.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W32-7.

10.

pKNOT: the protein KNOT web server.

Lai YL, Yen SC, Yu SH, Hwang JK.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W420-4. Epub 2007 May 25.

11.

InterProSurf: a web server for predicting interacting sites on protein surfaces.

Negi SS, Schein CH, Oezguen N, Power TD, Braun W.

Bioinformatics. 2007 Dec 15;23(24):3397-9. Epub 2007 Oct 12.

12.

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.

Dosztányi Z, Csizmok V, Tompa P, Simon I.

Bioinformatics. 2005 Aug 15;21(16):3433-4. Epub 2005 Jun 14.

PMID:
15955779
13.

Prediction of RNA binding sites in proteins from amino acid sequence.

Terribilini M, Lee JH, Yan C, Jernigan RL, Honavar V, Dobbs D.

RNA. 2006 Aug;12(8):1450-62. Epub 2006 Jun 21.

14.

DOMAC: an accurate, hybrid protein domain prediction server.

Cheng J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W354-6. Epub 2007 Jun 6.

15.
16.

PESDserv: a server for high-throughput comparison of protein binding site surfaces.

Das S, Krein MP, Breneman CM.

Bioinformatics. 2010 Aug 1;26(15):1913-4. doi: 10.1093/bioinformatics/btq288. Epub 2010 Jun 10.

17.

DoGSiteScorer: a web server for automatic binding site prediction, analysis and druggability assessment.

Volkamer A, Kuhn D, Rippmann F, Rarey M.

Bioinformatics. 2012 Aug 1;28(15):2074-5. doi: 10.1093/bioinformatics/bts310. Epub 2012 May 23.

PMID:
22628523
18.

SKINK: a web server for string kernel based kink prediction in α-helices.

Seifert T, Lund A, Kneissl B, Mueller SC, Tautermann CS, Hildebrandt A.

Bioinformatics. 2014 Jun 15;30(12):1769-70. doi: 10.1093/bioinformatics/btu096. Epub 2014 Feb 14.

PMID:
24532729
19.

SALIGN: a web server for alignment of multiple protein sequences and structures.

Braberg H, Webb BM, Tjioe E, Pieper U, Sali A, Madhusudhan MS.

Bioinformatics. 2012 Aug 1;28(15):2072-3. doi: 10.1093/bioinformatics/bts302. Epub 2012 May 21.

20.

DBAli tools: mining the protein structure space.

Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W393-7. Epub 2007 May 3.

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