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Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx).

Xia Q, Guo Y, Zhang Z, Li D, Xuan Z, Li Z, Dai F, Li Y, Cheng D, Li R, Cheng T, Jiang T, Becquet C, Xu X, Liu C, Zha X, Fan W, Lin Y, Shen Y, Jiang L, Jensen J, Hellmann I, Tang S, Zhao P, Xu H, Yu C, Zhang G, Li J, Cao J, Liu S, He N, Zhou Y, Liu H, Zhao J, Ye C, Du Z, Pan G, Zhao A, Shao H, Zeng W, Wu P, Li C, Pan M, Li J, Yin X, Li D, Wang J, Zheng H, Wang W, Zhang X, Li S, Yang H, Lu C, Nielsen R, Zhou Z, Wang J, Xiang Z, Wang J.

Science. 2009 Oct 16;326(5951):433-6. doi: 10.1126/science.1176620. Epub 2009 Aug 27.


Genetic diversity, molecular phylogeny and selection evidence of the silkworm mitochondria implicated by complete resequencing of 41 genomes.

Li D, Guo Y, Shao H, Tellier LC, Wang J, Xiang Z, Xia Q.

BMC Evol Biol. 2010 Mar 24;10:81. doi: 10.1186/1471-2148-10-81.


Genome-wide patterns of genetic variation among silkworms.

Zhang X, Nie M, Zhao Q, Wu Y, Wang G, Xia Q.

Mol Genet Genomics. 2015 Aug;290(4):1575-87. doi: 10.1007/s00438-015-1017-7. Epub 2015 Mar 7.


Comparative methylomics between domesticated and wild silkworms implies possible epigenetic influences on silkworm domestication.

Xiang H, Li X, Dai F, Xu X, Tan A, Chen L, Zhang G, Ding Y, Li Q, Lian J, Willden A, Guo Q, Xia Q, Wang J, Wang W.

BMC Genomics. 2013 Sep 23;14:646. doi: 10.1186/1471-2164-14-646.


Evidence of selection at melanin synthesis pathway loci during silkworm domestication.

Yu HS, Shen YH, Yuan GX, Hu YG, Xu HE, Xiang ZH, Zhang Z.

Mol Biol Evol. 2011 Jun;28(6):1785-99. doi: 10.1093/molbev/msr002. Epub 2011 Jan 6.


Nucleotide diversity and selection signature in the domesticated silkworm, Bombyx mori, and wild silkworm, Bombyx mandarina.

Guo Y, Shen YH, Sun W, Kishino H, Xiang ZH, Zhang Z.

J Insect Sci. 2011;11:155. doi: 10.1673/031.011.15501.


Phylogeny and evolutionary history of the silkworm.

Sun W, Yu H, Shen Y, Banno Y, Xiang Z, Zhang Z.

Sci China Life Sci. 2012 Jun;55(6):483-96. doi: 10.1007/s11427-012-4334-7. Epub 2012 Jun 29.


Identification and characterization of Sox genes in the silkworm, Bombyx mori.

Wei L, Cheng D, Li D, Meng M, Peng L, Tang L, Pan M, Xiang Z, Xia Q, Lu C.

Mol Biol Rep. 2011 Jun;38(5):3573-84. doi: 10.1007/s11033-010-0468-5. Epub 2010 Dec 15.


Demographic history and gene flow during silkworm domestication.

Yang SY, Han MJ, Kang LF, Li ZW, Shen YH, Zhang Z.

BMC Evol Biol. 2014 Aug 14;14:185. doi: 10.1186/s12862-014-0185-0.


Transcriptome sequencing and positive selected genes analysis of Bombyx mandarina.

Cheng T, Fu B, Wu Y, Long R, Liu C, Xia Q.

PLoS One. 2015 Mar 25;10(3):e0122837. doi: 10.1371/journal.pone.0122837. eCollection 2015.


An integrated genetic linkage map for silkworms with three parental combinations and its application to the mapping of single genes and QTL.

Zhan S, Huang J, Guo Q, Zhao Y, Li W, Miao X, Goldsmith MR, Li M, Huang Y.

BMC Genomics. 2009 Aug 21;10:389. doi: 10.1186/1471-2164-10-389.


Insect genetics. Sequencing 40 silkworm genomes unravels history of cultivation.

Normile D.

Science. 2009 Aug 28;325(5944):1058-9. doi: 10.1126/science.325_1058a. No abstract available.


The genome of a lepidopteran model insect, the silkworm Bombyx mori.

International Silkworm Genome Consortium.

Insect Biochem Mol Biol. 2008 Dec;38(12):1036-45. doi: 10.1016/j.ibmb.2008.11.004. Epub 2008 Dec 16.


A draft sequence for the genome of the domesticated silkworm (Bombyx mori).

Xia Q, Zhou Z, Lu C, Cheng D, Dai F, Li B, Zhao P, Zha X, Cheng T, Chai C, Pan G, Xu J, Liu C, Lin Y, Qian J, Hou Y, Wu Z, Li G, Pan M, Li C, Shen Y, Lan X, Yuan L, Li T, Xu H, Yang G, Wan Y, Zhu Y, Yu M, Shen W, Wu D, Xiang Z, Yu J, Wang J, Li R, Shi J, Li H, Li G, Su J, Wang X, Li G, Zhang Z, Wu Q, Li J, Zhang Q, Wei N, Xu J, Sun H, Dong L, Liu D, Zhao S, Zhao X, Meng Q, Lan F, Huang X, Li Y, Fang L, Li C, Li D, Sun Y, Zhang Z, Yang Z, Huang Y, Xi Y, Qi Q, He D, Huang H, Zhang X, Wang Z, Li W, Cao Y, Yu Y, Yu H, Li J, Ye J, Chen H, Zhou Y, Liu B, Wang J, Ye J, Ji H, Li S, Ni P, Zhang J, Zhang Y, Zheng H, Mao B, Wang W, Ye C, Li S, Wang J, Wong GK, Yang H; Biology Analysis Group.

Science. 2004 Dec 10;306(5703):1937-40.


BmSE, a SINE family with 3' ends of (ATTT) repeats in domesticated silkworm (Bombyx mori).

Xu J, Liu T, Li D, Zhang Z, Xia Q, Zhou Z.

J Genet Genomics. 2010 Feb;37(2):125-35. doi: 10.1016/S1673-8527(09)60031-X.


KAIKObase: an integrated silkworm genome database and data mining tool.

Shimomura M, Minami H, Suetsugu Y, Ohyanagi H, Satoh C, Antonio B, Nagamura Y, Kadono-Okuda K, Kajiwara H, Sezutsu H, Nagaraju J, Goldsmith MR, Xia Q, Yamamoto K, Mita K.

BMC Genomics. 2009 Oct 21;10:486. doi: 10.1186/1471-2164-10-486.


Expression of hGM-CSF in silk glands of transgenic silkworms using gene targeting vector.

Xue R, Chen H, Cui L, Cao G, Zhou W, Zheng X, Gong C.

Transgenic Res. 2012 Feb;21(1):101-11. doi: 10.1007/s11248-011-9513-y. Epub 2011 May 1.


Comparative Proteomic Analysis of Posterior Silk Glands of Wild and Domesticated Silkworms Reveals Functional Evolution during Domestication.

Li JY, Cai F, Ye XG, Liang JS, Li JK, Wu MY, Zhao D, Jiang ZD, You ZY, Zhong BX.

J Proteome Res. 2017 Jul 7;16(7):2495-2507. doi: 10.1021/acs.jproteome.7b00077. Epub 2017 Jun 12.


An adaptive transposable element insertion in the regulatory region of the EO gene in the domesticated silkworm, Bombyx mori.

Sun W, Shen YH, Han MJ, Cao YF, Zhang Z.

Mol Biol Evol. 2014 Dec;31(12):3302-13. doi: 10.1093/molbev/msu261. Epub 2014 Sep 10.


The genomic underpinnings of apoptosis in the silkworm, Bombyx mori.

Zhang JY, Pan MH, Sun ZY, Huang SJ, Yu ZS, Liu D, Zhao DH, Lu C.

BMC Genomics. 2010 Oct 31;11:611. doi: 10.1186/1471-2164-11-611.

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