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Items: 1 to 20 of 39

1.

Single-feature polymorphism discovery by computing probe affinity shape powers.

Xu WW, Cho S, Yang SS, Bolon YT, Bilgic H, Jia H, Xiong Y, Muehlbauer GJ.

BMC Genet. 2009 Aug 26;10:48. doi: 10.1186/1471-2156-10-48.

2.

A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays.

Horiuchi Y, Harushima Y, Fujisawa H, Mochizuki T, Kawakita M, Sakaguchi T, Kurata N.

BMC Genomics. 2010 May 20;11:315. doi: 10.1186/1471-2164-11-315.

3.

Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit.

Cui X, Xu J, Asghar R, Condamine P, Svensson JT, Wanamaker S, Stein N, Roose M, Close TJ.

Bioinformatics. 2005 Oct 15;21(20):3852-8. Epub 2005 Aug 23.

PMID:
16118260
4.

Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays.

Bernardo AN, Bradbury PJ, Ma H, Hu S, Bowden RL, Buckler ES, Bai G.

BMC Genomics. 2009 May 29;10:251. doi: 10.1186/1471-2164-10-251.

5.

Single feature polymorphism discovery in rice.

Kumar R, Qiu J, Joshi T, Valliyodan B, Xu D, Nguyen HT.

PLoS One. 2007 Mar 14;2(3):e284.

6.

Single-feature polymorphism discovery in the barley transcriptome.

Rostoks N, Borevitz JO, Hedley PE, Russell J, Mudie S, Morris J, Cardle L, Marshall DF, Waugh R.

Genome Biol. 2005;6(6):R54. Epub 2005 May 11.

7.

Single feature polymorphism detection using recombinant inbred line microarray expression data.

Cui X, You N, Girke T, Michelmore R, Van Deynze A.

Bioinformatics. 2010 Aug 15;26(16):1983-9. doi: 10.1093/bioinformatics/btq316. Epub 2010 Jun 23.

PMID:
20576626
8.

The barley UNICULM2 gene resides in a centromeric region and may be associated with signaling and stress responses.

Okagaki RJ, Cho S, Kruger WM, Xu WW, Heinen S, Muehlbauer GJ.

Funct Integr Genomics. 2013 Mar;13(1):33-41. doi: 10.1007/s10142-012-0299-7. Epub 2012 Oct 21.

PMID:
23086595
9.

Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays.

Bischoff SR, Tsai S, Hardison NE, York AM, Freking BA, Nonneman D, Rohrer G, Piedrahita JA.

BMC Genomics. 2008 May 29;9:252. doi: 10.1186/1471-2164-9-252.

10.

Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray.

Jiang H, Yi M, Mu J, Zhang L, Ivens A, Klimczak LJ, Huyen Y, Stephens RM, Su XZ.

BMC Genomics. 2008 Aug 25;9:398. doi: 10.1186/1471-2164-9-398.

11.

Single nucleotide polymorphism discovery in barley using autoSNPdb.

Duran C, Appleby N, Vardy M, Imelfort M, Edwards D, Batley J.

Plant Biotechnol J. 2009 May;7(4):326-33. doi: 10.1111/j.1467-7652.2009.00407.x.

12.

Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana.

Childs LH, Witucka-Wall H, Günther T, Sulpice R, Korff MV, Stitt M, Walther D, Schmid KJ, Altmann T.

BMC Genomics. 2010 Mar 20;11:188. doi: 10.1186/1471-2164-11-188.

14.

Genetic and morphological characterization of the barley uniculm2 (cul2) mutant.

Babb S, Muehlbauer GJ.

Theor Appl Genet. 2003 Mar;106(5):846-57. Epub 2003 Feb 11.

PMID:
12647059
15.

Single nucleotide polymorphism mapping and alignment of recombinant chromosome substitution lines in barley.

Sato K, Close TJ, Bhat P, Muñoz-Amatriaín M, Muehlbauer GJ.

Plant Cell Physiol. 2011 May;52(5):728-37. doi: 10.1093/pcp/pcr024. Epub 2011 Mar 21.

PMID:
21427110
16.

Self-custom-made SFP arrays for nonmodel organisms.

Ophir R, Sherman A.

Methods Mol Biol. 2012;815:39-47. doi: 10.1007/978-1-61779-424-7_4.

PMID:
22130982
17.

An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays.

Settles ML, Coram T, Soule T, Robison BD.

Mol Ecol Resour. 2012 Nov;12(6):1079-89. doi: 10.1111/1755-0998.12006. Epub 2012 Sep 12.

18.

Robust detection and genotyping of single feature polymorphisms from gene expression data.

Wang M, Hu X, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo Z.

PLoS Comput Biol. 2009 Mar;5(3):e1000317. doi: 10.1371/journal.pcbi.1000317. Epub 2009 Mar 13.

19.

Chalcone isomerase gene from rice (Oryza sativa) and barley (Hordeum vulgare): physical, genetic and mutation mapping.

Druka A, Kudrna D, Rostoks N, Brueggeman R, von Wettstein D, Kleinhofs A.

Gene. 2003 Jan 2;302(1-2):171-8.

PMID:
12527208
20.

A centromeric region on chromosome 6(6H) affects dormancy in an induced mutant in barley.

Prada D, Romagosa I, Ullrich SE, Molina-Cano JL.

J Exp Bot. 2005 Jan;56(409):47-54. Epub 2004 Oct 22.

PMID:
15501909

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