Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 114

1.

The effects of probe binding affinity differences on gene expression measurements and how to deal with them.

Dannemann M, Lorenc A, Hellmann I, Khaitovich P, Lachmann M.

Bioinformatics. 2009 Nov 1;25(21):2772-9. doi: 10.1093/bioinformatics/btp492. Epub 2009 Aug 18.

PMID:
19689957
2.

Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.

Jaksik R, Polańska J, Herok R, Rzeszowska-Wolny J.

Acta Biochim Pol. 2009;56(2):271-7. Epub 2009 May 12.

3.

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. doi: 10.1186/1471-2164-9-529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121.

4.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
5.

Combining gene expression data from different generations of oligonucleotide arrays.

Hwang KB, Kong SW, Greenberg SA, Park PJ.

BMC Bioinformatics. 2004 Oct 25;5:159.

6.

Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data.

Shedden K, Chen W, Kuick R, Ghosh D, Macdonald J, Cho KR, Giordano TJ, Gruber SB, Fearon ER, Taylor JM, Hanash S.

BMC Bioinformatics. 2005 Feb 10;6:26.

7.

Using DNA microarrays to study gene expression in closely related species.

Oshlack A, Chabot AE, Smyth GK, Gilad Y.

Bioinformatics. 2007 May 15;23(10):1235-42. Epub 2007 Mar 23.

PMID:
17384014
9.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

10.

Design of long oligonucleotide probes for functional gene detection in a microbial community.

Chung WH, Rhee SK, Wan XF, Bae JW, Quan ZX, Park YH.

Bioinformatics. 2005 Nov 15;21(22):4092-100. Epub 2005 Sep 13.

PMID:
16159916
11.

Can Zipf's law be adapted to normalize microarrays?

Lu T, Costello CM, Croucher PJ, Häsler R, Deuschl G, Schreiber S.

BMC Bioinformatics. 2005 Feb 23;6:37.

12.

Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.

Nueda MJ, Conesa A, Westerhuis JA, Hoefsloot HC, Smilde AK, Talón M, Ferrer A.

Bioinformatics. 2007 Jul 15;23(14):1792-800. Epub 2007 May 22.

PMID:
17519250
13.

Potential bias in GO::TermFinder.

Flight RM, Wentzell PD.

Brief Bioinform. 2009 May;10(3):289-94. doi: 10.1093/bib/bbn054. Epub 2009 Mar 11.

PMID:
19279157
14.

Probes containing runs of guanines provide insights into the biophysics and bioinformatics of Affymetrix GeneChips.

Langdon WB, Upton GJ, Harrison AP.

Brief Bioinform. 2009 May;10(3):259-77. doi: 10.1093/bib/bbp018. Epub 2009 Apr 8.

PMID:
19359259
15.

Identifying periodically expressed transcripts in microarray time series data.

Wichert S, Fokianos K, Strimmer K.

Bioinformatics. 2004 Jan 1;20(1):5-20.

PMID:
14693803
16.

Novel definition files for human GeneChips based on GeneAnnot.

Ferrari F, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.

BMC Bioinformatics. 2007 Nov 15;8:446.

17.

The effect of GeneChip gene definitions on the microarray study of cancers.

Lu X, Zhang X.

Bioessays. 2006 Jul;28(7):739-46.

PMID:
16850407
18.

Reverse engineering cellular networks.

Margolin AA, Wang K, Lim WK, Kustagi M, Nemenman I, Califano A.

Nat Protoc. 2006;1(2):662-71.

PMID:
17406294
19.

Integrated analysis of DNA copy number and gene expression microarray data using gene sets.

Menezes RX, Boetzer M, Sieswerda M, van Ommen GJ, Boer JM.

BMC Bioinformatics. 2009 Jun 29;10:203. doi: 10.1186/1471-2105-10-203.

20.

Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.

Muller J, Mehlen A, Vetter G, Yatskou M, Muller A, Chalmel F, Poch O, Friederich E, Vallar L.

BMC Genomics. 2007 Aug 29;8:294.

Supplemental Content

Support Center