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Items: 1 to 20 of 101

1.

A novel peak detection approach with chemical noise removal using short-time FFT for prOTOF MS data.

Zhang S, Wang H, Zhou X, Hoehn GT, DeGraba TJ, Gonzales DA, Suffredini AF, Ching WK, Ng MK, Wong ST.

Proteomics. 2009 Aug;9(15):3833-42. doi: 10.1002/pmic.200800030.

2.

A method detection limit for the analysis of natural organic matter via Fourier transform ion cyclotron resonance mass spectrometry.

Riedel T, Dittmar T.

Anal Chem. 2014 Aug 19;86(16):8376-82. doi: 10.1021/ac501946m. Epub 2014 Aug 6.

PMID:
25068187
3.

Isotopic peak intensity ratio based algorithm for determination of isotopic clusters and monoisotopic masses of polypeptides from high-resolution mass spectrometric data.

Park K, Yoon JY, Lee S, Paek E, Park H, Jung HJ, Lee SW.

Anal Chem. 2008 Oct 1;80(19):7294-303. doi: 10.1021/ac800913b. Epub 2008 Aug 28.

PMID:
18754627
4.

WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomic analysis.

Mo F, Mo Q, Chen Y, Goodlett DR, Hood L, Omenn GS, Li S, Lin B.

BMC Bioinformatics. 2010 Apr 29;11:219. doi: 10.1186/1471-2105-11-219.

5.

Strategy for purification and mass spectrometry identification of SELDI peaks corresponding to low-abundance plasma and serum proteins.

Fertin M, Burdese J, Beseme O, Amouyel P, Bauters C, Pinet F.

J Proteomics. 2011 Apr 1;74(4):420-30. doi: 10.1016/j.jprot.2010.12.005. Epub 2010 Dec 22.

PMID:
21184852
6.

i-RUBY: a novel software for quantitative analysis of highly accurate shotgun-proteomics liquid chromatography/tandem mass spectrometry data obtained without stable-isotope labeling of proteins.

Wada K, Ogiwara A, Nagasaka K, Tanaka N, Komatsu Y.

Rapid Commun Mass Spectrom. 2011 Apr 15;25(7):960-8. doi: 10.1002/rcm.4943. Epub 2011 Mar 14.

PMID:
21416533
7.

A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data.

Wang P, Yang P, Arthur J, Yang JY.

Bioinformatics. 2010 Sep 15;26(18):2242-9. doi: 10.1093/bioinformatics/btq403. Epub 2010 Jul 13.

PMID:
20628072
8.

Distinguishing analyte from noise components in mass spectra of complex samples: where to cut the noise?

Zhurov KO, Kozhinov AN, Fornelli L, Tsybin YO.

Anal Chem. 2014 Apr 1;86(7):3308-16. doi: 10.1021/ac403278t. Epub 2014 Mar 17.

PMID:
24579830
9.

Application of serum protein fingerprinting coupled with artificial neural network model in diagnosis of hepatocellular carcinoma.

Wang JX, Zhang B, Yu JK, Liu J, Yang MQ, Zheng S.

Chin Med J (Engl). 2005 Aug 5;118(15):1278-84.

PMID:
16117882
10.

Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra.

Alm R, Johansson P, Hjernø K, Emanuelsson C, Ringnér M, Häkkinen J.

J Proteome Res. 2006 Apr;5(4):785-92.

PMID:
16602684
12.

Peak detection in mass spectrometry by Gabor filters and envelope analysis.

Nguyen N, Huang H, Oraintara S, Vo A.

J Bioinform Comput Biol. 2009 Jun;7(3):547-69.

PMID:
19507289
13.

Utlization of human expert techniques for detection of low-abundant peaks in high-resolution mass spectra.

Boratyn GM, Merchant ML, Klein JB.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:5798-801.

PMID:
17947169
14.
15.

Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching.

Du P, Kibbe WA, Lin SM.

Bioinformatics. 2006 Sep 1;22(17):2059-65. Epub 2006 Jul 4.

PMID:
16820428
16.
17.
18.

Improving mass spectrometry peak detection using multiple peak alignment results.

Yu W, He Z, Liu J, Zhao H.

J Proteome Res. 2008 Jan;7(1):123-9. Epub 2007 Nov 22.

PMID:
18030999
19.

Mass spectrometry data processing using zero-crossing lines in multi-scale of Gaussian derivative wavelet.

Nguyen N, Huang H, Oraintara S, Vo A.

Bioinformatics. 2010 Sep 15;26(18):i659-65. doi: 10.1093/bioinformatics/btq397.

20.

Enhanced peptide quantification using spectral count clustering and cluster abundance.

Lee S, Kwon MS, Lee HJ, Paik YK, Tang H, Lee JK, Park T.

BMC Bioinformatics. 2011 Oct 28;12:423. doi: 10.1186/1471-2105-12-423.

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