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Items: 1 to 20 of 178

1.

Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize.

Kronmiller BA, Wise RP.

Plant Physiol. 2009 Oct;151(2):483-95. doi: 10.1104/pp.109.143370. Epub 2009 Aug 12.

2.

Evolution of DNA sequence nonhomologies among maize inbreds.

Brunner S, Fengler K, Morgante M, Tingey S, Rafalski A.

Plant Cell. 2005 Feb;17(2):343-60. Epub 2005 Jan 19.

3.

Fertility restorer locus Rf1 [corrected] of sorghum (Sorghum bicolor L.) encodes a pentatricopeptide repeat protein not present in the colinear region of rice chromosome 12.

Klein RR, Klein PE, Mullet JE, Minx P, Rooney WL, Schertz KF.

Theor Appl Genet. 2005 Oct;111(6):994-1012. Epub 2005 Aug 3. Erratum in: Theor Appl Genet. 2006 Jan;112(2):388.

PMID:
16078015
4.
5.

Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.

Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y.

PLoS Genet. 2009 Nov;5(11):e1000740. doi: 10.1371/journal.pgen.1000740. Epub 2009 Nov 20.

6.

TEnest: automated chronological annotation and visualization of nested plant transposable elements.

Kronmiller BA, Wise RP.

Plant Physiol. 2008 Jan;146(1):45-59. Epub 2007 Nov 21.

7.
8.

Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.

Sanyal A, Ammiraju JS, Lu F, Yu Y, Rambo T, Currie J, Kollura K, Kim HR, Chen J, Ma J, San Miguel P, Mingsheng C, Wing RA, Jackson SA.

Mol Biol Evol. 2010 Nov;27(11):2487-506. doi: 10.1093/molbev/msq133. Epub 2010 Jun 3.

PMID:
20522726
9.

Detailed analysis of a contiguous 22-Mb region of the maize genome.

Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, Nagel DH, Collura K, Kudrna D, Currie J, Lin J, Kim H, Angelova A, Scara G, Wissotski M, Golser W, Courtney L, Kruchowski S, Graves TA, Rock SM, Adams S, Fulton LA, Fronick C, Courtney W, Kramer M, Spiegel L, Nascimento L, Kalyanaraman A, Chaparro C, Deragon JM, Miguel PS, Jiang N, Wessler SR, Green PJ, Yu Y, Schwartz DC, Meyers BC, Bennetzen JL, Martienssen RA, McCombie WR, Aluru S, Clifton SW, Schnable PS, Ware D, Wilson RK, Wing RA.

PLoS Genet. 2009 Nov;5(11):e1000728. doi: 10.1371/journal.pgen.1000728. Epub 2009 Nov 20.

10.

Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex.

Ramakrishna W, Emberton J, SanMiguel P, Ogden M, Llaca V, Messing J, Bennetzen JL.

Plant Physiol. 2002 Dec;130(4):1728-38.

11.

LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes.

Frenkel Z, Paux E, Mester D, Feuillet C, Korol A.

BMC Bioinformatics. 2010 Nov 30;11:584. doi: 10.1186/1471-2105-11-584.

12.

A novel class of Helitron-related transposable elements in maize contain portions of multiple pseudogenes.

Gupta S, Gallavotti A, Stryker GA, Schmidt RJ, Lal SK.

Plant Mol Biol. 2005 Jan;57(1):115-27.

PMID:
15821872
13.

Sequence and analysis of rice chromosome 4.

Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, Ying K, Yu S, Tang Y, Weng Q, Zhang L, Lu Y, Mu J, Lu Y, Zhang LS, Yu Z, Fan D, Liu X, Lu T, Li C, Wu Y, Sun T, Lei H, Li T, Hu H, Guan J, Wu M, Zhang R, Zhou B, Chen Z, Chen L, Jin Z, Wang R, Yin H, Cai Z, Ren S, Lv G, Gu W, Zhu G, Tu Y, Jia J, Zhang Y, Chen J, Kang H, Chen X, Shao C, Sun Y, Hu Q, Zhang X, Zhang W, Wang L, Ding C, Sheng H, Gu J, Chen S, Ni L, Zhu F, Chen W, Lan L, Lai Y, Cheng Z, Gu M, Jiang J, Li J, Hong G, Xue Y, Han B.

Nature. 2002 Nov 21;420(6913):316-20.

PMID:
12447439
14.

Insular organization of gene space in grass genomes.

Gottlieb A, Müller HG, Massa AN, Wanjugi H, Deal KR, You FM, Xu X, Gu YQ, Luo MC, Anderson OD, Chan AP, Rabinowicz P, Devos KM, Dvorak J.

PLoS One. 2013;8(1):e54101. doi: 10.1371/journal.pone.0054101. Epub 2013 Jan 11.

15.

Maize genome sequencing by methylation filtration.

Palmer LE, Rabinowicz PD, O'Shaughnessy AL, Balija VS, Nascimento LU, Dike S, de la Bastide M, Martienssen RA, McCombie WR.

Science. 2003 Dec 19;302(5653):2115-7.

16.

Retrotranspositions in orthologous regions of closely related grass species.

Du C, Swigonová Z, Messing J.

BMC Evol Biol. 2006 Aug 16;6:62.

17.

Genome-wide survey and comparative analysis of LTR retrotransposons and their captured genes in rice and sorghum.

Jiang SY, Ramachandran S.

PLoS One. 2013 Jul 29;8(7):e71118. doi: 10.1371/journal.pone.0071118. Print 2013.

18.

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum.

Hass-Jacobus BL, Futrell-Griggs M, Abernathy B, Westerman R, Goicoechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY, Walling JG, Luo MZ, Ammiraju JS, Kudrna D, Kim HR, Ware D, Wing RA, San Miguel P, Jackson SA.

BMC Genomics. 2006 Aug 8;7:199.

19.

A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.

Ilic K, SanMiguel PJ, Bennetzen JL.

Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12265-70. Epub 2003 Oct 6.

20.

Enrichment of gene-coding sequences in maize by genome filtration.

Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J.

Science. 2003 Dec 19;302(5653):2118-20.

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