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Items: 1 to 20 of 94

1.

Trees in the web of life.

Swithers KS, Gogarten JP, Fournier GP.

J Biol. 2009;8(6):54. doi: 10.1186/jbiol160. Epub 2009 Jul 13. Review.

2.

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

3.

Search for a 'Tree of Life' in the thicket of the phylogenetic forest.

Puigbò P, Wolf YI, Koonin EV.

J Biol. 2009;8(6):59. doi: 10.1186/jbiol159. Epub 2009 Jul 13.

4.

The net of life: reconstructing the microbial phylogenetic network.

Kunin V, Goldovsky L, Darzentas N, Ouzounis CA.

Genome Res. 2005 Jul;15(7):954-9. Epub 2005 Jun 17.

5.

Phylogenetics and the cohesion of bacterial genomes.

Daubin V, Moran NA, Ochman H.

Science. 2003 Aug 8;301(5634):829-32.

6.

Evolution. Passages found through labyrinth of bacterial evolution.

Pennisi E.

Science. 2003 Aug 8;301(5634):745-6. No abstract available.

PMID:
12907766
7.

The Turbulent Network Dynamics of Microbial Evolution and the Statistical Tree of Life.

Koonin EV.

J Mol Evol. 2015 Jun;80(5-6):244-50. doi: 10.1007/s00239-015-9679-7. Epub 2015 Apr 18. Review.

8.

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

Creevey CJ, Fitzpatrick DA, Philip GK, Kinsella RJ, O'Connell MJ, Pentony MM, Travers SA, Wilkinson M, McInerney JO.

Proc Biol Sci. 2004 Dec 22;271(1557):2551-8.

9.

Phylogenomic networks.

Dagan T.

Trends Microbiol. 2011 Oct;19(10):483-91. doi: 10.1016/j.tim.2011.07.001. Epub 2011 Aug 3. Review.

PMID:
21820313
10.

Recovering the treelike trend of evolution despite extensive lateral genetic transfer: a probabilistic analysis.

Roch S, Snir S.

J Comput Biol. 2013 Feb;20(2):93-112. doi: 10.1089/cmb.2012.0234.

11.

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.

Koonin EV, Wolf YI.

Nucleic Acids Res. 2008 Dec;36(21):6688-719. doi: 10.1093/nar/gkn668. Epub 2008 Oct 23. Review.

12.

Evolution of genes and organisms: the tree/web of life in light of horizontal gene transfer.

Olendzenski L, Gogarten JP.

Ann N Y Acad Sci. 2009 Oct;1178:137-45. doi: 10.1111/j.1749-6632.2009.04998.x.

PMID:
19845634
13.

Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes.

Coenye T, Vandamme P.

FEMS Microbiol Lett. 2005 Jan 1;242(1):117-26.

15.

Extensive horizontal transfer of core genome genes between two Lactobacillus species found in the gastrointestinal tract.

Nicolas P, Bessières P, Ehrlich SD, Maguin E, van de Guchte M.

BMC Evol Biol. 2007 Aug 20;7:141.

16.

Gene gain and loss events in Rickettsia and Orientia species.

Georgiades K, Merhej V, El Karkouri K, Raoult D, Pontarotti P.

Biol Direct. 2011 Feb 8;6:6. doi: 10.1186/1745-6150-6-6.

17.

Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.

Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV.

Genome Biol. 2003;4(9):R55. Epub 2003 Aug 29.

18.

Lateral gene transfer as a support for the tree of life.

Abby SS, Tannier E, Gouy M, Daubin V.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4962-7. doi: 10.1073/pnas.1116871109. Epub 2012 Mar 13.

19.

Evolution of mercuric reductase (merA) gene: a case of horizontal gene transfer.

Lal D, Lal R.

Mikrobiologiia. 2010 Jul-Aug;79(4):524-31.

PMID:
21058506
20.

Evolutionary implications of horizontal gene transfer.

Syvanen M.

Annu Rev Genet. 2012;46:341-58. doi: 10.1146/annurev-genet-110711-155529. Epub 2012 Aug 29. Review.

PMID:
22934638

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