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Items: 1 to 20 of 163

1.

Comparison of next generation sequencing technologies for transcriptome characterization.

Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, dePamphilis CW.

BMC Genomics. 2009 Aug 1;10:347. doi: 10.1186/1471-2164-10-347.

2.

Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C(3) and C(4) species.

Bräutigam A, Mullick T, Schliesky S, Weber AP.

J Exp Bot. 2011 May;62(9):3093-102. doi: 10.1093/jxb/err029. Epub 2011 Mar 11.

PMID:
21398430
3.

A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus.

Marques MC, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, Perez-Amador MA.

BMC Genomics. 2009 Sep 11;10:428. doi: 10.1186/1471-2164-10-428.

4.

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.

Mane SP, Evans C, Cooper KL, Crasta OR, Folkerts O, Hutchison SK, Harkins TT, Thierry-Mieg D, Thierry-Mieg J, Jensen RV.

BMC Genomics. 2009 Jun 12;10:264. doi: 10.1186/1471-2164-10-264.

5.

Characterization of Oncidium 'Gower Ramsey' transcriptomes using 454 GS-FLX pyrosequencing and their application to the identification of genes associated with flowering time.

Chang YY, Chu YW, Chen CW, Leu WM, Hsu HF, Yang CH.

Plant Cell Physiol. 2011 Sep;52(9):1532-45. doi: 10.1093/pcp/pcr101. Epub 2011 Jul 23.

PMID:
21785129
6.
7.

Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.

Ralph SG, Chun HJ, Cooper D, Kirkpatrick R, Kolosova N, Gunter L, Tuskan GA, Douglas CJ, Holt RA, Jones SJ, Marra MA, Bohlmann J.

BMC Genomics. 2008 Jan 29;9:57. doi: 10.1186/1471-2164-9-57.

8.

RNA sequencing read depth requirement for optimal transcriptome coverage in Hevea brasiliensis.

Chow KS, Ghazali AK, Hoh CC, Mohd-Zainuddin Z.

BMC Res Notes. 2014 Feb 1;7:69. doi: 10.1186/1756-0500-7-69.

9.

Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.

Cheung F, Haas BJ, Goldberg SM, May GD, Xiao Y, Town CD.

BMC Genomics. 2006 Oct 24;7:272.

10.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

11.

Generation of a large catalog of unique transcripts for whole-genome expression analysis in nonmodel species.

Bellin D, Ferrarini A, Delledonne M.

Methods Mol Biol. 2011;729:257-69. doi: 10.1007/978-1-61779-065-2_17.

PMID:
21365496
12.

Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies.

Zahn LM, Ma X, Altman NS, Zhang Q, Wall PK, Tian D, Gibas CJ, Gharaibeh R, Leebens-Mack JH, Depamphilis CW, Ma H.

Genome Biol. 2010;11(10):R101. doi: 10.1186/gb-2010-11-10-r101. Epub 2010 Oct 15.

13.

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas).

Wang Z, Fang B, Chen J, Zhang X, Luo Z, Huang L, Chen X, Li Y.

BMC Genomics. 2010 Dec 24;11:726. doi: 10.1186/1471-2164-11-726.

14.

Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches.

Cheung F, Win J, Lang JM, Hamilton J, Vuong H, Leach JE, Kamoun S, André Lévesque C, Tisserat N, Buell CR.

BMC Genomics. 2008 Nov 15;9:542. doi: 10.1186/1471-2164-9-542.

15.

De novo sequencing, assembly, and analysis of the root transcriptome of Persea americana (Mill.) in response to Phytophthora cinnamomi and flooding.

Reeksting BJ, Coetzer N, Mahomed W, Engelbrecht J, van den Berg N.

PLoS One. 2014 Feb 10;9(2):e86399. doi: 10.1371/journal.pone.0086399. eCollection 2014.

16.

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing.

Franssen SU, Shrestha RP, Bräutigam A, Bornberg-Bauer E, Weber AP.

BMC Genomics. 2011 May 11;12:227. doi: 10.1186/1471-2164-12-227.

18.

Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.

Vega-Arreguín JC, Ibarra-Laclette E, Jiménez-Moraila B, Martínez O, Vielle-Calzada JP, Herrera-Estrella L, Herrera-Estrella A.

BMC Genomics. 2009 Jul 6;10:299. doi: 10.1186/1471-2164-10-299.

19.

A comparison of next generation sequencing technologies for transcriptome assembly and utility for RNA-Seq in a non-model bird.

Finseth FR, Harrison RG.

PLoS One. 2014 Oct 3;9(10):e108550. doi: 10.1371/journal.pone.0108550. eCollection 2014.

20.

Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies.

Wetzel J, Kingsford C, Pop M.

BMC Bioinformatics. 2011 Apr 13;12:95. doi: 10.1186/1471-2105-12-95.

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