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Items: 1 to 20 of 89

1.

Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human.

Zhang K, Li JB, Gao Y, Egli D, Xie B, Deng J, Li Z, Lee JH, Aach J, Leproust EM, Eggan K, Church GM.

Nat Methods. 2009 Aug;6(8):613-8. doi: 10.1038/nmeth.1357. Epub 2009 Jul 20.

2.

Detecting imbalanced expression of SNP alleles by minisequencing on microarrays.

Liljedahl U, Fredriksson M, Dahlgren A, Syvänen AC.

BMC Biotechnol. 2004 Oct 22;4:24.

3.

Genome-wide survey of allele-specific splicing in humans.

Nembaware V, Lupindo B, Schouest K, Spillane C, Scheffler K, Seoighe C.

BMC Genomics. 2008 Jun 2;9:265. doi: 10.1186/1471-2164-9-265.

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Identification of transcriptome SNPs for assessing allele-specific gene expression in a super-hybrid rice Xieyou9308.

Zhai R, Feng Y, Zhan X, Shen X, Wu W, Yu P, Zhang Y, Chen D, Wang H, Lin Z, Cao L, Cheng S.

PLoS One. 2013 Apr 17;8(4):e60668. doi: 10.1371/journal.pone.0060668. Print 2013.

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7.

Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing.

Heap GA, Yang JH, Downes K, Healy BC, Hunt KA, Bockett N, Franke L, Dubois PC, Mein CA, Dobson RJ, Albert TJ, Rodesch MJ, Clayton DG, Todd JA, van Heel DA, Plagnol V.

Hum Mol Genet. 2010 Jan 1;19(1):122-34. doi: 10.1093/hmg/ddp473.

8.

SNP-based large-scale identification of allele-specific gene expression in human B cells.

Song MY, Kim HE, Kim S, Choi IH, Lee JK.

Gene. 2012 Feb 10;493(2):211-8. doi: 10.1016/j.gene.2011.11.058. Epub 2011 Dec 8.

PMID:
22178530
10.

Comparison of genotyping using pooled DNA samples (allelotyping) and individual genotyping using the affymetrix genome-wide human SNP array 6.0.

Teumer A, Ernst FD, Wiechert A, Uhr K, Nauck M, Petersmann A, Völzke H, Völker U, Homuth G.

BMC Genomics. 2013 Jul 26;14:506. doi: 10.1186/1471-2164-14-506.

11.

Detection of allelic imbalance in gene expression using pyrosequencing.

Wang H, Elbein SC.

Methods Mol Biol. 2007;373:157-76.

PMID:
17185765
12.

Transcriptome and genome sequencing uncovers functional variation in humans.

Lappalainen T, Sammeth M, Friedländer MR, 't Hoen PA, Monlong J, Rivas MA, Gonzàlez-Porta M, Kurbatova N, Griebel T, Ferreira PG, Barann M, Wieland T, Greger L, van Iterson M, Almlöf J, Ribeca P, Pulyakhina I, Esser D, Giger T, Tikhonov A, Sultan M, Bertier G, MacArthur DG, Lek M, Lizano E, Buermans HP, Padioleau I, Schwarzmayr T, Karlberg O, Ongen H, Kilpinen H, Beltran S, Gut M, Kahlem K, Amstislavskiy V, Stegle O, Pirinen M, Montgomery SB, Donnelly P, McCarthy MI, Flicek P, Strom TM; Geuvadis Consortium., Lehrach H, Schreiber S, Sudbrak R, Carracedo A, Antonarakis SE, Häsler R, Syvänen AC, van Ommen GJ, Brazma A, Meitinger T, Rosenstiel P, Guigó R, Gut IG, Estivill X, Dermitzakis ET.

Nature. 2013 Sep 26;501(7468):506-11. doi: 10.1038/nature12531. Epub 2013 Sep 15.

13.

A robust approach to identifying tissue-specific gene expression regulatory variants using personalized human induced pluripotent stem cells.

Lee JH, Park IH, Gao Y, Li JB, Li Z, Daley GQ, Zhang K, Church GM.

PLoS Genet. 2009 Nov;5(11):e1000718. doi: 10.1371/journal.pgen.1000718. Epub 2009 Nov 13.

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Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids.

Shen Y, Catchen J, Garcia T, Amores A, Beldorth I, Wagner J, Zhang Z, Postlethwait J, Warren W, Schartl M, Walter RB.

Comp Biochem Physiol C Toxicol Pharmacol. 2012 Jan;155(1):102-8. doi: 10.1016/j.cbpc.2011.03.012. Epub 2011 Apr 3.

16.

Analysis of allelic differential expression in human white blood cells.

Pant PV, Tao H, Beilharz EJ, Ballinger DG, Cox DR, Frazer KA.

Genome Res. 2006 Mar;16(3):331-9. Epub 2006 Feb 8.

17.

Development of a versatile, target-oriented tiling microarray assay for measuring allele-specific gene expression.

He H, Zhang H, Wang X, Wu N, Yang X, Chen R, Li Y, Deng XW, Li L.

Genomics. 2010 Nov;96(5):308-15. doi: 10.1016/j.ygeno.2010.07.008. Epub 2010 Aug 3.

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Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression.

Serre D, Gurd S, Ge B, Sladek R, Sinnett D, Harmsen E, Bibikova M, Chudin E, Barker DL, Dickinson T, Fan JB, Hudson TJ.

PLoS Genet. 2008 Feb 29;4(2):e1000006. doi: 10.1371/journal.pgen.1000006.

20.

Allelic skewing of DNA methylation is widespread across the genome.

Schalkwyk LC, Meaburn EL, Smith R, Dempster EL, Jeffries AR, Davies MN, Plomin R, Mill J.

Am J Hum Genet. 2010 Feb 12;86(2):196-212. doi: 10.1016/j.ajhg.2010.01.014.

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