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Items: 1 to 20 of 194

1.

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.

Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K.

Nat Struct Mol Biol. 2009 Aug;16(8):847-52. doi: 10.1038/nsmb.1636. Epub 2009 Jul 20.

2.

Weakly positioned nucleosomes enhance the transcriptional competency of chromatin.

Belch Y, Yang J, Liu Y, Malkaram SA, Liu R, Riethoven JJ, Ladunga I.

PLoS One. 2010 Sep 24;5(9):e12984. doi: 10.1371/journal.pone.0012984.

3.

Nucleosome free regions in yeast promoters result from competitive binding of transcription factors that interact with chromatin modifiers.

Ozonov EA, van Nimwegen E.

PLoS Comput Biol. 2013;9(8):e1003181. doi: 10.1371/journal.pcbi.1003181. Epub 2013 Aug 22.

4.

Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters.

Tolkunov D, Zawadzki KA, Singer C, Elfving N, Morozov AV, Broach JR.

Mol Biol Cell. 2011 Jun 15;22(12):2106-18. doi: 10.1091/mbc.E10-10-0826. Epub 2011 Apr 20.

5.

Genome-Wide Analysis of Nucleosome Positions, Occupancy, and Accessibility in Yeast: Nucleosome Mapping, High-Resolution Histone ChIP, and NCAM.

Rodriguez J, McKnight JN, Tsukiyama T.

Curr Protoc Mol Biol. 2014 Oct 1;108:21.28.1-16. doi: 10.1002/0471142727.mb2128s108. Review.

7.

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF.

Nature. 2007 Mar 29;446(7135):572-6.

PMID:
17392789
8.

A genomic code for nucleosome positioning.

Segal E, Fondufe-Mittendorf Y, Chen L, Thåström A, Field Y, Moore IK, Wang JP, Widom J.

Nature. 2006 Aug 17;442(7104):772-8. Epub 2006 Jul 19.

9.

A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome.

Zhang Z, Wippo CJ, Wal M, Ward E, Korber P, Pugh BF.

Science. 2011 May 20;332(6032):977-80. doi: 10.1126/science.1200508.

10.

Roles of transcription factor Mot3 and chromatin in repression of the hypoxic gene ANB1 in yeast.

Kastaniotis AJ, Mennella TA, Konrad C, Torres AM, Zitomer RS.

Mol Cell Biol. 2000 Oct;20(19):7088-98.

11.

Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation.

Fan X, Moqtaderi Z, Jin Y, Zhang Y, Liu XS, Struhl K.

Proc Natl Acad Sci U S A. 2010 Oct 19;107(42):17945-50. doi: 10.1073/pnas.1012674107. Epub 2010 Oct 4.

12.

Nucleosome positioning in yeasts: methods, maps, and mechanisms.

Lieleg C, Krietenstein N, Walker M, Korber P.

Chromosoma. 2015 Jun;124(2):131-51. doi: 10.1007/s00412-014-0501-x. Epub 2014 Dec 23. Review.

PMID:
25529773
13.

A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon.

Baller JA, Gao J, Stamenova R, Curcio MJ, Voytas DF.

Genome Res. 2012 Apr;22(4):704-13. doi: 10.1101/gr.129585.111. Epub 2012 Jan 4.

14.

Yeast HMO1: Linker Histone Reinvented.

Panday A, Grove A.

Microbiol Mol Biol Rev. 2016 Nov 30;81(1). pii: e00037-16. Print 2017 Mar. Review.

15.

Active nucleosome positioning beyond intrinsic biophysics is revealed by in vitro reconstitution.

Korber P.

Biochem Soc Trans. 2012 Apr;40(2):377-82. doi: 10.1042/BST20110730. Review.

PMID:
22435815
16.

Distinct roles for histone chaperones in the deposition of Htz1 in chromatin.

Liu H, Zhu M, Mu Y, Liu L, Li G, Wan Y.

Biosci Rep. 2014 Sep 19;34(5). pii: e00139. doi: 10.1042/BSR20140092.

17.

Nucleosome positioning signals in genomic DNA.

Peckham HE, Thurman RE, Fu Y, Stamatoyannopoulos JA, Noble WS, Struhl K, Weng Z.

Genome Res. 2007 Aug;17(8):1170-7. Epub 2007 Jul 9.

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20.

Differential cofactor requirements for histone eviction from two nucleosomes at the yeast PHO84 promoter are determined by intrinsic nucleosome stability.

Wippo CJ, Krstulovic BS, Ertel F, Musladin S, Blaschke D, Stürzl S, Yuan GC, Hörz W, Korber P, Barbaric S.

Mol Cell Biol. 2009 Jun;29(11):2960-81. doi: 10.1128/MCB.01054-08. Epub 2009 Mar 23.

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