Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 62

1.

Molecular networks and system-level properties.

Alberghina L, Höfer T, Vanoni M.

J Biotechnol. 2009 Nov;144(3):224-33. doi: 10.1016/j.jbiotec.2009.07.009. Epub 2009 Jul 17. Review.

PMID:
19616593
2.

Systems biology of the cell cycle of Saccharomyces cerevisiae: From network mining to system-level properties.

Alberghina L, Coccetti P, Orlandi I.

Biotechnol Adv. 2009 Nov-Dec;27(6):960-78. doi: 10.1016/j.biotechadv.2009.05.021. Epub 2009 May 22. Review.

PMID:
19465107
3.

A data integration approach for cell cycle analysis oriented to model simulation in systems biology.

Alfieri R, Merelli I, Mosca E, Milanesi L.

BMC Syst Biol. 2007 Aug 1;1:35.

4.

Insights into the network controlling the G1/S transition in budding yeast.

Barberis M, Klipp E.

Genome Inform. 2007;18:85-99.

PMID:
18546477
5.

Genome-wide system analysis reveals stable yet flexible network dynamics in yeast.

Gustafsson M, Hörnquist M, Björkegren J, Tegnér J.

IET Syst Biol. 2009 Jul;3(4):219-28. doi: 10.1049/iet-syb.2008.0112.

PMID:
19640161
6.

Networks and circuits in cell regulation.

Palumbo P, Mavelli G, Farina L, Alberghina L.

Biochem Biophys Res Commun. 2010 Jun 11;396(4):881-6. doi: 10.1016/j.bbrc.2010.05.015. Epub 2010 May 10.

PMID:
20457126
7.

Biological network design strategies: discovery through dynamic optimization.

Adiwijaya BS, Barton PI, Tidor B.

Mol Biosyst. 2006 Dec;2(12):650-9. Epub 2006 Oct 27.

PMID:
17216046
8.

The properties of hub proteins in a yeast-aggregated cell cycle network and its phase sub-networks.

Wu X, Guo J, Zhang DY, Lin K.

Proteomics. 2009 Oct;9(20):4812-24. doi: 10.1002/pmic.200900053.

PMID:
19743420
9.

Cell growth and cell cycle in Saccharomyces cerevisiae: basic regulatory design and protein-protein interaction network.

Alberghina L, Mavelli G, Drovandi G, Palumbo P, Pessina S, Tripodi F, Coccetti P, Vanoni M.

Biotechnol Adv. 2012 Jan-Feb;30(1):52-72. doi: 10.1016/j.biotechadv.2011.07.010. Epub 2011 Jul 22. Review.

PMID:
21821114
10.

Signal transduction networks: topology, response and biochemical processes.

Soyer OS, Salathé M, Bonhoeffer S.

J Theor Biol. 2006 Jan 21;238(2):416-25. Epub 2005 Jul 20.

PMID:
16045939
11.

Defining a modular signalling network from the fly interactome.

Baudot A, Angelelli JB, Guénoche A, Jacq B, Brun C.

BMC Syst Biol. 2008 May 19;2:45. doi: 10.1186/1752-0509-2-45.

12.

Prediction of key factor controlling G1/S phase in the mammalian cell cycle using system analysis.

Tashima Y, Hamada H, Okamoto M, Hanai T.

J Biosci Bioeng. 2008 Oct;106(4):368-74. doi: 10.1263/jbb.106.368.

PMID:
19000613
13.

Robustness and topology of the yeast cell cycle Boolean network.

Lee WB, Huang JY.

FEBS Lett. 2009 Mar 4;583(5):927-32. doi: 10.1016/j.febslet.2009.02.010. Epub 2009 Feb 10.

14.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

15.

Functional and evolutionary inference in gene networks: does topology matter?

Siegal ML, Promislow DE, Bergman A.

Genetica. 2007 Jan;129(1):83-103. Epub 2006 Aug 8.

PMID:
16897451
16.

Building and analysing genome-wide gene disruption networks.

Rung J, Schlitt T, Brazma A, Freivalds K, Vilo J.

Bioinformatics. 2002;18 Suppl 2:S202-10.

PMID:
12386004
17.

Interaction networks: from protein functions to drug discovery. A review.

Chautard E, Thierry-Mieg N, Ricard-Blum S.

Pathol Biol (Paris). 2009 Jun;57(4):324-33. doi: 10.1016/j.patbio.2008.10.004. Epub 2008 Dec 13. Review.

PMID:
19070972
18.

Predicting biological system objectives de novo from internal state measurements.

Gianchandani EP, Oberhardt MA, Burgard AP, Maranas CD, Papin JA.

BMC Bioinformatics. 2008 Jan 24;9:43. doi: 10.1186/1471-2105-9-43.

19.

An analysis of the class of gene regulatory functions implied by a biochemical model.

Grefenstette J, Kim S, Kauffman S.

Biosystems. 2006 May;84(2):81-90. Epub 2005 Dec 27.

PMID:
16384633
20.

Mathematical modeling of complex regulatory networks.

Stelling J, Gilles ED.

IEEE Trans Nanobioscience. 2004 Sep;3(3):172-9.

PMID:
15473069

Supplemental Content

Support Center