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Items: 1 to 20 of 184

1.

P2CS: a two-component system resource for prokaryotic signal transduction research.

Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Méjean V, Whitworth DE.

BMC Genomics. 2009 Jul 15;10:315. doi: 10.1186/1471-2164-10-315.

2.

P2CS: a database of prokaryotic two-component systems.

Barakat M, Ortet P, Whitworth DE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D771-6. doi: 10.1093/nar/gkq1023. Epub 2010 Nov 4.

3.

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.

Haft DH, Selengut JD, Brinkac LM, Zafar N, White O.

Bioinformatics. 2005 Feb 1;21(3):293-306. Epub 2004 Sep 3.

PMID:
15347579
4.

P2CS: updates of the prokaryotic two-component systems database.

Ortet P, Whitworth DE, Santaella C, Achouak W, Barakat M.

Nucleic Acids Res. 2015 Jan;43(Database issue):D536-41. doi: 10.1093/nar/gku968. Epub 2014 Oct 16.

5.

MaGe: a microbial genome annotation system supported by synteny results.

Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Médigue C.

Nucleic Acids Res. 2006 Jan 10;34(1):53-65. Print 2006.

6.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

7.

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.

8.

P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.

9.

PPD - Proteome Profile Database.

Sakharkar KR, Chow VT.

In Silico Biol. 2004;4(2):219-23.

PMID:
15107025
10.

An experimental metagenome data management and analysis system.

Markowitz VM, Ivanova N, Palaniappan K, Szeto E, Korzeniewski F, Lykidis A, Anderson I, Mavromatis K, Kunin V, Garcia Martin H, Dubchak I, Hugenholtz P, Kyrpides NC.

Bioinformatics. 2006 Jul 15;22(14):e359-67. Erratum in: Bioinformatics. 2006 Oct 15;22(20):2580. Mavrommatis, Konstantinos [corrected to Mavromatis, Konstantinos].

PMID:
16873494
11.

GeneTrees: a phylogenomics resource for prokaryotes.

Tian Y, Dickerman AW.

Nucleic Acids Res. 2007 Jan;35(Database issue):D328-31. Epub 2006 Dec 6.

12.

Towards multidimensional genome annotation.

Reed JL, Famili I, Thiele I, Palsson BO.

Nat Rev Genet. 2006 Feb;7(2):130-41. Review.

PMID:
16418748
13.

SENTRA, a database of signal transduction proteins.

D'Souza M, Romine MF, Maltsev N.

Nucleic Acids Res. 2000 Jan 1;28(1):335-6.

14.
16.

Gene3D: comprehensive structural and functional annotation of genomes.

Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C.

Nucleic Acids Res. 2008 Jan;36(Database issue):D414-8. Epub 2007 Nov 21.

17.

EnGenIUS -- Environmental Genome Informational Utility System.

Kaplarevic M, Murray AE, Cary SC, Gao GR.

J Bioinform Comput Biol. 2008 Dec;6(6):1193-211.

PMID:
19090024
18.

The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide.

Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D332-4.

19.

The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology.

Hallin PF, Binnewies TT, Ussery DW.

Mol Biosyst. 2008 May;4(5):363-71. doi: 10.1039/b717118h. Epub 2008 Mar 17.

PMID:
18414733
20.

P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes.

Barakat M, Ortet P, Whitworth DE.

BMC Genomics. 2013 Apr 20;14:269. doi: 10.1186/1471-2164-14-269.

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