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Items: 1 to 20 of 102

1.

Dereplication and de novo sequencing of nonribosomal peptides.

Ng J, Bandeira N, Liu WT, Ghassemian M, Simmons TL, Gerwick WH, Linington R, Dorrestein PC, Pevzner PA.

Nat Methods. 2009 Aug;6(8):596-9. doi: 10.1038/nmeth.1350. Epub 2009 Jul 13.

2.

NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery.

Mohimani H, Liu WT, Kersten RD, Moore BS, Dorrestein PC, Pevzner PA.

J Nat Prod. 2014 Aug 22;77(8):1902-9. doi: 10.1021/np500370c. Epub 2014 Aug 12.

3.

A proteomic survey of nonribosomal peptide and polyketide biosynthesis in actinobacteria.

Chen Y, Ntai I, Ju KS, Unger M, Zamdborg L, Robinson SJ, Doroghazi JR, Labeda DP, Metcalf WW, Kelleher NL.

J Proteome Res. 2012 Jan 1;11(1):85-94. doi: 10.1021/pr2009115. Epub 2011 Oct 25.

4.

Nonribosomal peptides: from genes to products.

Schwarzer D, Finking R, Marahiel MA.

Nat Prod Rep. 2003 Jun;20(3):275-87. Review.

PMID:
12828367
5.

Nonribosomal peptide synthesis in animals: the cyclodipeptide synthase of Nematostella.

Seguin J, Moutiez M, Li Y, Belin P, Lecoq A, Fonvielle M, Charbonnier JB, Pernodet JL, Gondry M.

Chem Biol. 2011 Nov 23;18(11):1362-8. doi: 10.1016/j.chembiol.2011.09.010.

6.

Application of an efficient gene targeting system linking secondary metabolites to their biosynthetic genes in Aspergillus terreus.

Guo CJ, Knox BP, Sanchez JF, Chiang YM, Bruno KS, Wang CC.

Org Lett. 2013 Jul 19;15(14):3562-5. doi: 10.1021/ol401384v. Epub 2013 Jul 10.

7.

Multiplex de novo sequencing of peptide antibiotics.

Mohimani H, Liu WT, Yang YL, Gaudêncio SP, Fenical W, Dorrestein PC, Pevzner PA.

J Comput Biol. 2011 Nov;18(11):1371-81. doi: 10.1089/cmb.2011.0158. Epub 2011 Oct 28.

8.

Introduction of a non-natural amino acid into a nonribosomal peptide antibiotic by modification of adenylation domain specificity.

Thirlway J, Lewis R, Nunns L, Al Nakeeb M, Styles M, Struck AW, Smith CP, Micklefield J.

Angew Chem Int Ed Engl. 2012 Jul 16;51(29):7181-4. doi: 10.1002/anie.201202043. Epub 2012 Jun 18.

PMID:
22711659
9.

NORINE: a database of nonribosomal peptides.

Caboche S, Pupin M, Leclère V, Fontaine A, Jacques P, Kucherov G.

Nucleic Acids Res. 2008 Jan;36(Database issue):D326-31. Epub 2007 Oct 2.

10.

Analysis of 51 cyclodipeptide synthases reveals the basis for substrate specificity.

Jacques IB, Moutiez M, Witwinowski J, Darbon E, Martel C, Seguin J, Favry E, Thai R, Lecoq A, Dubois S, Pernodet JL, Gondry M, Belin P.

Nat Chem Biol. 2015 Sep;11(9):721-7. doi: 10.1038/nchembio.1868. Epub 2015 Aug 3.

PMID:
26236937
11.

Genome-based cryptic gene discovery and functional identification of NRPS siderophore peptide in Streptomyces peucetius.

Park HM, Kim BG, Chang D, Malla S, Joo HS, Kim EJ, Park SJ, Sohng JK, Kim PI.

Appl Microbiol Biotechnol. 2013 Feb;97(3):1213-22. doi: 10.1007/s00253-012-4268-9. Epub 2012 Jul 24.

PMID:
22825833
13.

Jahnellamides, α-keto-β-methionine-containing peptides from the terrestrial myxobacterium Jahnella sp.: structure and biosynthesis.

Plaza A, Viehrig K, Garcia R, Müller R.

Org Lett. 2013 Nov 15;15(22):5882-5. doi: 10.1021/ol402967y. Epub 2013 Nov 7.

PMID:
24199909
14.

SPIDER: software for protein identification from sequence tags with de novo sequencing error.

Han Y, Ma B, Zhang K.

Proc IEEE Comput Syst Bioinform Conf. 2004:206-15.

PMID:
16448014
15.

A non-canonical NRPS is involved in the synthesis of fungisporin and related hydrophobic cyclic tetrapeptides in Penicillium chrysogenum.

Ali H, Ries MI, Lankhorst PP, van der Hoeven RA, Schouten OL, Noga M, Hankemeier T, van Peij NN, Bovenberg RA, Vreeken RJ, Driessen AJ.

PLoS One. 2014 Jun 2;9(6):e98212. doi: 10.1371/journal.pone.0098212. eCollection 2014.

16.

pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra.

Chi H, Chen H, He K, Wu L, Yang B, Sun RX, Liu J, Zeng WF, Song CQ, He SM, Dong MQ.

J Proteome Res. 2013 Feb 1;12(2):615-25. doi: 10.1021/pr3006843. Epub 2012 Dec 28.

PMID:
23272783
17.
18.

CYCLONE--a utility for de novo sequencing of microbial cyclic peptides.

Kavan D, Kuzma M, Lemr K, Schug KA, Havlicek V.

J Am Soc Mass Spectrom. 2013 Aug;24(8):1177-84. doi: 10.1007/s13361-013-0652-7. Epub 2013 May 24.

PMID:
23702710
19.

Two alternative starter modules for the non-ribosomal biosynthesis of specific anabaenopeptin variants in Anabaena (Cyanobacteria).

Rouhiainen L, Jokela J, Fewer DP, Urmann M, Sivonen K.

Chem Biol. 2010 Mar 26;17(3):265-73. doi: 10.1016/j.chembiol.2010.01.017.

20.

pNovo: de novo peptide sequencing and identification using HCD spectra.

Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM, Dong MQ.

J Proteome Res. 2010 May 7;9(5):2713-24. doi: 10.1021/pr100182k.

PMID:
20329752

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