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Items: 1 to 20 of 99

1.

Transcriptional and post-transcriptional profile of human chromosome 21.

Nikolaev SI, Deutsch S, Genolet R, Borel C, Parand L, Ucla C, Schütz F, Duriaux Sail G, Dupré Y, Jaquier-Gubler P, Araud T, Conne B, Descombes P, Vassalli JD, Curran J, Antonarakis SE.

Genome Res. 2009 Aug;19(8):1471-9. doi: 10.1101/gr.089425.108. Epub 2009 Jul 6.

2.

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22.

Kampa D, Cheng J, Kapranov P, Yamanaka M, Brubaker S, Cawley S, Drenkow J, Piccolboni A, Bekiranov S, Helt G, Tammana H, Gingeras TR.

Genome Res. 2004 Mar;14(3):331-42.

3.

Messenger RNAs under differential translational control in Ki-ras-transformed cells.

Spence J, Duggan BM, Eckhardt C, McClelland M, Mercola D.

Mol Cancer Res. 2006 Jan;4(1):47-60.

4.

Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays.

Sellam A, Hogues H, Askew C, Tebbji F, van Het Hoog M, Lavoie H, Kumamoto CA, Whiteway M, Nantel A.

Genome Biol. 2010;11(7):R71. doi: 10.1186/gb-2010-11-7-r71. Epub 2010 Jul 9.

5.

Identification of a novel gene by whole human genome tiling array.

Ishida H, Yagi T, Tanaka M, Tokuda Y, Kamoi K, Hongo F, Kawauchi A, Nakano M, Miki T, Tashiro K.

Gene. 2013 Mar 1;516(1):33-8. doi: 10.1016/j.gene.2012.11.076. Epub 2012 Dec 19.

PMID:
23261826
6.

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs.

Affymetrix ENCODE Transcriptome Project; Cold Spring Harbor Laboratory ENCODE Transcriptome Project.

Nature. 2009 Feb 19;457(7232):1028-32. doi: 10.1038/nature07759. Epub 2009 Jan 25.

7.
8.

Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays.

Kumar R, Shah P, Swiatlo E, Burgess SC, Lawrence ML, Nanduri B.

BMC Genomics. 2010 Jun 3;11:350. doi: 10.1186/1471-2164-11-350.

9.

ENCODE tiling array analysis identifies differentially expressed annotated and novel 5' capped RNAs in hepatitis C infected liver.

Folkers ME, Delker DA, Maxwell CI, Nelson CA, Schwartz JJ, Nix DA, Hagedorn CH.

PLoS One. 2011 Feb 16;6(2):e14697. doi: 10.1371/journal.pone.0014697.

10.

Global identification and characterization of transcriptionally active regions in the rice genome.

Li L, Wang X, Sasidharan R, Stolc V, Deng W, He H, Korbel J, Chen X, Tongprasit W, Ronald P, Chen R, Gerstein M, Deng XW.

PLoS One. 2007 Mar 14;2(3):e294.

11.

Mapping of small RNAs in the human ENCODE regions.

Borel C, Gagnebin M, Gehrig C, Kriventseva EV, Zdobnov EM, Antonarakis SE.

Am J Hum Genet. 2008 Apr;82(4):971-81. doi: 10.1016/j.ajhg.2008.02.016.

12.

Posttranscriptional control of photosynthetic mRNA decay under stress conditions requires 3' and 5' untranslated regions and correlates with differential polysome association in rice.

Park SH, Chung PJ, Juntawong P, Bailey-Serres J, Kim YS, Jung H, Bang SW, Kim YK, Do Choi Y, Kim JK.

Plant Physiol. 2012 Jul;159(3):1111-24. doi: 10.1104/pp.112.194928. Epub 2012 May 7. Erratum in: Plant Physiol. 2012 Oct;160(2):1145.

13.

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays.

Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C.

Nucleic Acids Res. 2002 Sep 1;30(17):3732-8.

14.

A comprehensive transcript index of the human genome generated using microarrays and computational approaches.

Schadt EE, Edwards SW, GuhaThakurta D, Holder D, Ying L, Svetnik V, Leonardson A, Hart KW, Russell A, Li G, Cavet G, Castle J, McDonagh P, Kan Z, Chen R, Kasarskis A, Margarint M, Caceres RM, Johnson JM, Armour CD, Garrett-Engele PW, Tsinoremas NF, Shoemaker DD.

Genome Biol. 2004;5(10):R73. Epub 2004 Sep 23.

15.

The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci.

Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M, Gerstein MB.

Genome Res. 2007 Jun;17(6):732-45.

16.

Large-scale transcriptional activity in chromosomes 21 and 22.

Kapranov P, Cawley SE, Drenkow J, Bekiranov S, Strausberg RL, Fodor SP, Gingeras TR.

Science. 2002 May 3;296(5569):916-9.

17.

Efficient targeted transcript discovery via array-based normalization of RACE libraries.

Djebali S, Kapranov P, Foissac S, Lagarde J, Reymond A, Ucla C, Wyss C, Drenkow J, Dumais E, Murray RR, Lin C, Szeto D, Denoeud F, Calvo M, Frankish A, Harrow J, Makrythanasis P, Vidal M, Salehi-Ashtiani K, Antonarakis SE, Gingeras TR, Guigó R.

Nat Methods. 2008 Jul;5(7):629-35. doi: 10.1038/nmeth.1216. Epub 2008 May 25.

18.

Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.

Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN Jr, Markley JL, Sussman MR.

Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4453-8. Epub 2005 Mar 8.

19.

Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome.

Wu JQ, Du J, Rozowsky J, Zhang Z, Urban AE, Euskirchen G, Weissman S, Gerstein M, Snyder M.

Genome Biol. 2008 Jan 3;9(1):R3. doi: 10.1186/gb-2008-9-1-r3.

20.

Transcriptional regulation of the human ST6GAL2 gene in cerebral cortex and neuronal cells.

Lehoux S, Groux-Degroote S, Cazet A, Dhaenens CM, Maurage CA, Caillet-Boudin ML, Delannoy P, Krzewinski-Recchi MA.

Glycoconj J. 2010 Jan;27(1):99-114. doi: 10.1007/s10719-009-9260-y. Epub 2009 Sep 19.

PMID:
19768537

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