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Items: 1 to 20 of 116

1.

Representative transcript sets for evaluating a translational initiation sites predictor.

Zeng J, Alhajj R, Demetrick DJ.

BMC Bioinformatics. 2009 Jul 2;10:206. doi: 10.1186/1471-2105-10-206.

2.

MetWAMer: eukaryotic translation initiation site prediction.

Sparks ME, Brendel V.

BMC Bioinformatics. 2008 Sep 18;9:381. doi: 10.1186/1471-2105-9-381.

3.
4.

A 3D sequence-independent representation of the protein data bank.

Fischer D, Tsai CJ, Nussinov R, Wolfson H.

Protein Eng. 1995 Oct;8(10):981-97.

PMID:
8771179
5.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
6.

High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.

Teichert F, Minning J, Bastolla U, Porto M.

BMC Bioinformatics. 2010 May 14;11:251. doi: 10.1186/1471-2105-11-251.

8.

Selection of representative protein data sets.

Hobohm U, Scharf M, Schneider R, Sander C.

Protein Sci. 1992 Mar;1(3):409-17.

9.

Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Pascual-GarcĂ­a A, Abia D, Ortiz AR, Bastolla U.

PLoS Comput Biol. 2009 Mar;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331. Epub 2009 Mar 27.

10.

OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.

Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ.

BMC Bioinformatics. 2003 Oct 10;4:47.

11.

A comprehensive system for evaluation of remote sequence similarity detection.

Qi Y, Sadreyev RI, Wang Y, Kim BH, Grishin NV.

BMC Bioinformatics. 2007 Aug 28;8:314.

12.

Computational evaluation of TIS annotation for prokaryotic genomes.

Hu GQ, Zheng X, Ju LN, Zhu H, She ZS.

BMC Bioinformatics. 2008 Mar 25;9:160. doi: 10.1186/1471-2105-9-160.

13.

Consensus alignment for reliable framework prediction in homology modeling.

Prasad JC, Comeau SR, Vajda S, Camacho CJ.

Bioinformatics. 2003 Sep 1;19(13):1682-91.

PMID:
12967965
14.

Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined.

Falkner J, Andrews P.

Bioinformatics. 2005 May 15;21(10):2177-84. Epub 2005 Mar 3.

PMID:
15746284
15.

Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection.

Narasimhan C, LoCascio P, Uberbacher E.

Bioinformatics. 2003 Oct 12;19(15):1952-63.

PMID:
14555629
16.

Removing near-neighbour redundancy from large protein sequence collections.

Holm L, Sander C.

Bioinformatics. 1998 Jun;14(5):423-9.

PMID:
9682055
17.

Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.

Fromer M, Yanover C.

Proteins. 2009 May 15;75(3):682-705. doi: 10.1002/prot.22280.

PMID:
19003998
18.

Transient protein-protein interface prediction: datasets, features, algorithms, and the RAD-T predictor.

Bendell CJ, Liu S, Aumentado-Armstrong T, Istrate B, Cernek PT, Khan S, Picioreanu S, Zhao M, Murgita RA.

BMC Bioinformatics. 2014 Mar 24;15:82. doi: 10.1186/1471-2105-15-82.

19.

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.

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