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Items: 1 to 20 of 86

1.

A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry.

Thompson RF, Suzuki M, Lau KW, Greally JM.

Bioinformatics. 2009 Sep 1;25(17):2164-70. doi: 10.1093/bioinformatics/btp382. Epub 2009 Jun 26.

2.

methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.

Pattyn F, Hoebeeck J, Robbrecht P, Michels E, De Paepe A, Bottu G, Coornaert D, Herzog R, Speleman F, Vandesompele J.

BMC Bioinformatics. 2006 Nov 9;7:496.

3.

DNA methylation: bisulphite modification and analysis.

Patterson K, Molloy L, Qu W, Clark S.

J Vis Exp. 2011 Oct 21;(56). pii: 3170. doi: 10.3791/3170.

4.

DNA methylation: bisulphite modification and analysis.

Clark SJ, Statham A, Stirzaker C, Molloy PL, Frommer M.

Nat Protoc. 2006;1(5):2353-64.

PMID:
17406479
5.

Predicting DNA Methylation State of CpG Dinucleotide Using Genome Topological Features and Deep Networks.

Wang Y, Liu T, Xu D, Shi H, Zhang C, Mo YY, Wang Z.

Sci Rep. 2016 Jan 22;6:19598. doi: 10.1038/srep19598.

6.

Automated computational analysis of genome-wide DNA methylation profiling data from HELP-tagging assays.

Jing Q, McLellan A, Greally JM, Suzuki M.

Methods Mol Biol. 2012;815:79-87. doi: 10.1007/978-1-61779-424-7_7.

PMID:
22130985
7.

Sequenom, Inc.

Cullinan A, Cantor C.

Pharmacogenomics. 2008 Sep;9(9):1211-5. doi: 10.2217/14622416.9.9.1211.

PMID:
18781849
8.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

9.

Bisulfite methylation profiling of large genomes.

Reinders J, Paszkowski J.

Epigenomics. 2010 Apr;2(2):209-20. doi: 10.2217/epi.10.6. Review.

PMID:
22121871
10.

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.

Halder R, Halder K, Sharma P, Garg G, Sengupta S, Chowdhury S.

Mol Biosyst. 2010 Dec;6(12):2439-47. doi: 10.1039/c0mb00009d. Epub 2010 Sep 29.

PMID:
20877913
11.

Detection and measurement of PCR bias in quantitative methylation analysis of bisulphite-treated DNA.

Warnecke PM, Stirzaker C, Melki JR, Millar DS, Paul CL, Clark SJ.

Nucleic Acids Res. 1997 Nov 1;25(21):4422-6.

12.

Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees.

Cingolani P, Cao X, Khetani RS, Chen CC, Coon M, Sammak A, Bollig-Fischer A, Land S, Huang Y, Hudson ME, Garfinkel MD, Zhong S, Robinson GE, Ruden DM.

BMC Genomics. 2013 Sep 30;14:666. doi: 10.1186/1471-2164-14-666.

13.

Evaluation of a potential epigenetic biomarker by quantitative methyl-single nucleotide polymorphism analysis.

Uhlmann K, Brinckmann A, Toliat MR, Ritter H, N├╝rnberg P.

Electrophoresis. 2002 Dec;23(24):4072-9.

PMID:
12481262
14.

A combined bisulfite restriction analysis bioinformatics tool: methyl-typing.

Yang CH, Cheng YH, Chuang LY, Chang HW.

Methods Mol Biol. 2011;791:73-88. doi: 10.1007/978-1-61779-316-5_6.

PMID:
21913072
16.

Fast and sensitive mapping of bisulfite-treated sequencing data.

Otto C, Stadler PF, Hoffmann S.

Bioinformatics. 2012 Jul 1;28(13):1698-704. doi: 10.1093/bioinformatics/bts254. Epub 2012 May 10.

PMID:
22581174
17.

Kismeth: analyzer of plant methylation states through bisulfite sequencing.

Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R.

BMC Bioinformatics. 2008 Sep 11;9:371. doi: 10.1186/1471-2105-9-371.

18.

Genome-wide analysis of DNA methylation patterns.

Zilberman D, Henikoff S.

Development. 2007 Nov;134(22):3959-65. Epub 2007 Oct 10. Review.

19.

Real-time PCR-based assay for quantitative determination of methylation status.

Lehmann U, Kreipe H.

Methods Mol Biol. 2004;287:207-18.

PMID:
15273414
20.

DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.

Zhang Y, Rohde C, Tierling S, Stamerjohanns H, Reinhardt R, Walter J, Jeltsch A.

Methods Mol Biol. 2009;507:177-87. doi: 10.1007/978-1-59745-522-0_14.

PMID:
18987815

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