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Items: 1 to 20 of 101

1.

Dual-axis target mapping and automated sequential acquisition of dual-axis EM tomographic data.

Zheng SQ, Matsuda A, Braunfeld MB, Sedat JW, Agard DA.

J Struct Biol. 2009 Nov;168(2):323-31. doi: 10.1016/j.jsb.2009.06.010. Epub 2009 Jun 21.

2.

Automated data collection for electron microscopic tomography.

Zheng SQ, Sedat JW, Agard DA.

Methods Enzymol. 2010;481:283-315. doi: 10.1016/S0076-6879(10)81012-2.

PMID:
20887862
3.

Conical Fourier shell correlation applied to electron tomograms.

Diebolder CA, Faas FG, Koster AJ, Koning RI.

J Struct Biol. 2015 May;190(2):215-23. doi: 10.1016/j.jsb.2015.03.010. Epub 2015 Apr 3.

PMID:
25843950
4.

Fully automated, sequential tilt-series acquisition with Leginon.

Suloway C, Shi J, Cheng A, Pulokas J, Carragher B, Potter CS, Zheng SQ, Agard DA, Jensen GJ.

J Struct Biol. 2009 Jul;167(1):11-8. doi: 10.1016/j.jsb.2009.03.019. Epub 2009 Apr 8.

5.

UCSF tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction.

Zheng SQ, Keszthelyi B, Branlund E, Lyle JM, Braunfeld MB, Sedat JW, Agard DA.

J Struct Biol. 2007 Jan;157(1):138-47. Epub 2006 Jun 23.

PMID:
16904341
6.

Automated batch fiducial-less tilt-series alignment in Appion using Protomo.

Noble AJ, Stagg SM.

J Struct Biol. 2015 Nov;192(2):270-8. doi: 10.1016/j.jsb.2015.10.003. Epub 2015 Oct 9.

7.

Marker-free dual-axis tilt series alignment.

Winkler H, Taylor KA.

J Struct Biol. 2013 May;182(2):117-24. doi: 10.1016/j.jsb.2013.02.004. Epub 2013 Feb 19.

8.

Tomographic subvolume alignment and subvolume classification applied to myosin V and SIV envelope spikes.

Winkler H, Zhu P, Liu J, Ye F, Roux KH, Taylor KA.

J Struct Biol. 2009 Feb;165(2):64-77. doi: 10.1016/j.jsb.2008.10.004. Epub 2008 Nov 8.

9.

Initial evaluation of a direct detection device detector for single particle cryo-electron microscopy.

Milazzo AC, Cheng A, Moeller A, Lyumkis D, Jacovetty E, Polukas J, Ellisman MH, Xuong NH, Carragher B, Potter CS.

J Struct Biol. 2011 Dec;176(3):404-8. doi: 10.1016/j.jsb.2011.09.002. Epub 2011 Sep 10.

10.

Using Tomoauto: A Protocol for High-throughput Automated Cryo-electron Tomography.

Morado DR, Hu B, Liu J.

J Vis Exp. 2016 Jan 30;(107):e53608. doi: 10.3791/53608.

11.

Alignator: a GPU powered software package for robust fiducial-less alignment of cryo tilt-series.

Castaño-Díez D, Scheffer M, Al-Amoudi A, Frangakis AS.

J Struct Biol. 2010 Apr;170(1):117-26. doi: 10.1016/j.jsb.2010.01.014. Epub 2010 Feb 1.

PMID:
20117216
12.

Cryo-electron tomography for structural characterization of macromolecular complexes.

Cope J, Heumann J, Hoenger A.

Curr Protoc Protein Sci. 2011 Aug;Chapter 17:Unit17.13. doi: 10.1002/0471140864.ps1713s65.

13.

Cryo-electron tomography of microtubules assembled in vitro from purified components.

Coquelle FM, Blestel S, Heichette C, Arnal I, Kervrann C, Chrétien D.

Methods Mol Biol. 2011;777:193-208. doi: 10.1007/978-1-61779-252-6_14.

PMID:
21773930
14.

Leginon: an automated system for acquisition of images from vitreous ice specimens.

Carragher B, Kisseberth N, Kriegman D, Milligan RA, Potter CS, Pulokas J, Reilein A.

J Struct Biol. 2000 Oct;132(1):33-45.

PMID:
11121305
15.

Automated tilt series alignment and tomographic reconstruction in IMOD.

Mastronarde DN, Held SR.

J Struct Biol. 2017 Feb;197(2):102-113. doi: 10.1016/j.jsb.2016.07.011. Epub 2016 Jul 19.

PMID:
27444392
16.
17.

Simultaneous alignment of dual-axis tilt series.

Cantele F, Paccagnini E, Pigino G, Lupetti P, Lanzavecchia S.

J Struct Biol. 2010 Feb;169(2):192-9. doi: 10.1016/j.jsb.2009.10.003. Epub 2009 Oct 8.

PMID:
19818858
18.

Quantifying resolution limiting factors in subtomogram averaged cryo-electron tomography using simulations.

Voortman LM, Vulović M, Maletta M, Voigt A, Franken EM, Simonetti A, Peters PJ, van Vliet LJ, Rieger B.

J Struct Biol. 2014 Aug;187(2):103-11. doi: 10.1016/j.jsb.2014.06.007. Epub 2014 Jul 3.

PMID:
24998892
19.

A novel approach for correlative light electron microscopy analysis.

Vicidomini G, Gagliani MC, Cortese K, Krieger J, Buescher P, Bianchini P, Boccacci P, Tacchetti C, Diaspro A.

Microsc Res Tech. 2010 Mar;73(3):215-24. doi: 10.1002/jemt.20777.

PMID:
19725102
20.

Methods for aligning and for averaging 3D volumes with missing data.

Schmid MF, Booth CR.

J Struct Biol. 2008 Mar;161(3):243-8. doi: 10.1016/j.jsb.2007.09.018. Epub 2007 Oct 1.

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