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Items: 1 to 20 of 136

1.

SmpB contributes to reading frame selection in the translation of transfer-messenger RNA.

Watts T, Cazier D, Healey D, Buskirk A.

J Mol Biol. 2009 Aug 14;391(2):275-81. doi: 10.1016/j.jmb.2009.06.037. Epub 2009 Jun 21.

2.

Active and accurate trans-translation requires distinct determinants in the C-terminal tail of SmpB protein and the mRNA-like domain of transfer messenger RNA (tmRNA).

Camenares D, Dulebohn DP, Svetlanov A, Karzai AW.

J Biol Chem. 2013 Oct 18;288(42):30527-42. doi: 10.1074/jbc.M113.503896. Epub 2013 Aug 28.

3.

Visualizing the transfer-messenger RNA as the ribosome resumes translation.

Fu J, Hashem Y, Wower I, Lei J, Liao HY, Zwieb C, Wower J, Frank J.

EMBO J. 2010 Nov 17;29(22):3819-25. doi: 10.1038/emboj.2010.255. Epub 2010 Oct 12.

4.

tmRNA on its way through the ribosome: two steps of resume, and what next?

Fu J, Hashem Y, Wower J, Frank J.

RNA Biol. 2011 Jul-Aug;8(4):586-90. doi: 10.4161/rna.8.4.15585. Epub 2011 Jul 1.

5.

The role of SmpB and the ribosomal decoding center in licensing tmRNA entry into stalled ribosomes.

Miller MR, Liu Z, Cazier DJ, Gebhard GM, Herron SR, Zaher HS, Green R, Buskirk AR.

RNA. 2011 Sep;17(9):1727-36. doi: 10.1261/rna.2821711. Epub 2011 Jul 27.

6.

tmRNA-SmpB: a journey to the centre of the bacterial ribosome.

Weis F, Bron P, Giudice E, Rolland JP, Thomas D, Felden B, Gillet R.

EMBO J. 2010 Nov 17;29(22):3810-8. doi: 10.1038/emboj.2010.252. Epub 2010 Oct 15.

7.

The tmRNA system for translational surveillance and ribosome rescue.

Moore SD, Sauer RT.

Annu Rev Biochem. 2007;76:101-24. Review.

PMID:
17291191
8.

The role of upstream sequences in selecting the reading frame on tmRNA.

Miller MR, Healey DW, Robison SG, Dewey JD, Buskirk AR.

BMC Biol. 2008 Jun 30;6:29. doi: 10.1186/1741-7007-6-29.

9.

A functional interaction of SmpB with tmRNA for determination of the resuming point of trans-translation.

Konno T, Kurita D, Takada K, Muto A, Himeno H.

RNA. 2007 Oct;13(10):1723-31. Epub 2007 Aug 13.

10.

Requirements for resuming translation in chimeric transfer-messenger RNAs of Escherichia coli and Mycobacterium tuberculosis.

Wower IK, Zwieb C, Wower J.

BMC Mol Biol. 2014 Sep 15;15:19. doi: 10.1186/1471-2199-15-19.

11.

Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation.

Metzinger L, Hallier M, Felden B.

Nucleic Acids Res. 2005 Apr 28;33(8):2384-94. Print 2005.

12.

One SmpB molecule accompanies tmRNA during its passage through the ribosomes.

Bugaeva EY, Shpanchenko OV, Felden B, Isaksson LA, Dontsova OA.

FEBS Lett. 2008 Apr 30;582(10):1532-6. doi: 10.1016/j.febslet.2008.03.049. Epub 2008 Apr 7.

13.

Simultaneous and functional binding of SmpB and EF-Tu-TP to the alanyl acceptor arm of tmRNA.

Barends S, Karzai AW, Sauer RT, Wower J, Kraal B.

J Mol Biol. 2001 Nov 16;314(1):9-21.

PMID:
11724528
14.

Rejection of tmRNA·SmpB after GTP hydrolysis by EF-Tu on ribosomes stalled on intact mRNA.

Kurita D, Miller MR, Muto A, Buskirk AR, Himeno H.

RNA. 2014 Nov;20(11):1706-14. doi: 10.1261/rna.045773.114. Epub 2014 Sep 22.

15.

Studying tmRNA-mediated surveillance and nonstop mRNA decay.

Sundermeier T, Ge Z, Richards J, Dulebohn D, Karzai AW.

Methods Enzymol. 2008;447:329-58. doi: 10.1016/S0076-6879(08)02217-9.

PMID:
19161851
16.

Resuming translation on tmRNA: a unique mode of determining a reading frame.

Williams KP, Martindale KA, Bartel DP.

EMBO J. 1999 Oct 1;18(19):5423-33.

17.

Distinct tmRNA sequence elements facilitate RNase R engagement on rescued ribosomes for selective nonstop mRNA decay.

Venkataraman K, Zafar H, Karzai AW.

Nucleic Acids Res. 2014;42(17):11192-202. doi: 10.1093/nar/gku802. Epub 2014 Sep 8.

18.

Structure probing of tmRNA in distinct stages of trans-translation.

Ivanova N, Lindell M, Pavlov M, Holmberg Schiavone L, Wagner EG, Ehrenberg M.

RNA. 2007 May;13(5):713-22. Epub 2007 Mar 30.

19.

Visualizing tmRNA entry into a stalled ribosome.

Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J.

Science. 2003 Apr 4;300(5616):127-30.

20.

The complex of tmRNA-SmpB and EF-G on translocating ribosomes.

Ramrath DJ, Yamamoto H, Rother K, Wittek D, Pech M, Mielke T, Loerke J, Scheerer P, Ivanov P, Teraoka Y, Shpanchenko O, Nierhaus KH, Spahn CM.

Nature. 2012 May 6;485(7399):526-9. doi: 10.1038/nature11006.

PMID:
22622583

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