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Items: 1 to 20 of 573

1.

Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays.

Thomassen GO, Rowe AD, Lagesen K, Lindvall JM, Rognes T.

PLoS One. 2009 Jun 17;4(6):e5943. doi: 10.1371/journal.pone.0005943.

2.

Optimized design and assessment of whole genome tiling arrays.

Gräf S, Nielsen FG, Kurtz S, Huynen MA, Birney E, Stunnenberg H, Flicek P.

Bioinformatics. 2007 Jul 1;23(13):i195-204.

PMID:
17646297
3.

Transcript mapping with high-density oligonucleotide tiling arrays.

Huber W, Toedling J, Steinmetz LM.

Bioinformatics. 2006 Aug 15;22(16):1963-70. Epub 2006 Jun 20.

PMID:
16787969
4.

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB.

Bioinformatics. 2007 Apr 15;23(8):988-97. Epub 2007 Mar 25.

PMID:
17387113
5.

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery.

Bertone P, Gerstein M, Snyder M.

Chromosome Res. 2005;13(3):259-74. Review.

PMID:
15868420
6.

In silico gene selection strategy for custom microarray design.

Dondeti VR, Sipe CW, Saha MS.

Biotechniques. 2004 Nov;37(5):768-70, 772, 774-6.

PMID:
15560133
7.

Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.

Hu G, Llinás M, Li J, Preiser PR, Bozdech Z.

BMC Bioinformatics. 2007 Sep 19;8:350.

8.

Oligo Design: a computer program for development of probes for oligonucleotide microarrays.

Herold KE, Rasooly A.

Biotechniques. 2003 Dec;35(6):1216-21.

PMID:
14682056
9.

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Du J, Rozowsky JS, Korbel JO, Zhang ZD, Royce TE, Schultz MH, Snyder M, Gerstein M.

Bioinformatics. 2006 Dec 15;22(24):3016-24. Epub 2006 Oct 12.

PMID:
17038339
10.

Design of long oligonucleotide probes for functional gene detection in a microbial community.

Chung WH, Rhee SK, Wan XF, Bae JW, Quan ZX, Park YH.

Bioinformatics. 2005 Nov 15;21(22):4092-100. Epub 2005 Sep 13.

PMID:
16159916
11.

Design of tiling arrays and their application to bacterial transcriptome analysis.

Akama T, Nakamura K, Tanoue A, Suzuki K.

Methods Mol Biol. 2013;1067:23-34. doi: 10.1007/978-1-62703-607-8_2.

PMID:
23975783
12.

Dual-genome primer design for construction of DNA microarrays.

Andersson A, Bernander R, Nilsson P.

Bioinformatics. 2005 Feb 1;21(3):325-32. Epub 2004 Aug 27.

PMID:
15333463
13.

Applications of DNA tiling arrays for whole-genome analysis.

Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR.

Genomics. 2005 Jan;85(1):1-15. Review. Erratum in: Genomics. 2005 May;85(5):655. Chan, Simon [added]; Sundaresan, Ambika [added]; Chen, Huaming [added]; Jacobsen, Steven E [added].

PMID:
15607417
14.

A hidden Markov model approach for determining expression from genomic tiling micro arrays.

Munch K, Gardner PP, Arctander P, Krogh A.

BMC Bioinformatics. 2006 May 3;7:239.

15.

Robust detection and genotyping of single feature polymorphisms from gene expression data.

Wang M, Hu X, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo Z.

PLoS Comput Biol. 2009 Mar;5(3):e1000317. doi: 10.1371/journal.pcbi.1000317. Epub 2009 Mar 13.

16.

Combining microarrays and genetic analysis.

Alberts R, Fu J, Swertz MA, Lubbers LA, Albers CJ, Jansen RC.

Brief Bioinform. 2005 Jun;6(2):135-45.

PMID:
15975223
17.

Thermodynamically optimal whole-genome tiling microarray design and validation.

Cho H, Chou HH.

BMC Res Notes. 2016 Jun 13;9:305. doi: 10.1186/s13104-016-2113-4.

18.

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. doi: 10.1186/1471-2164-9-529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121.

19.

Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.

Jaksik R, Polańska J, Herok R, Rzeszowska-Wolny J.

Acta Biochim Pol. 2009;56(2):271-7. Epub 2009 May 12.

20.

Utilizing tiling microarrays for whole-genome analysis in plants.

Gregory BD, Yazaki J, Ecker JR.

Plant J. 2008 Feb;53(4):636-44. doi: 10.1111/j.1365-313X.2007.03320.x. Review.

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