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Items: 1 to 20 of 63

1.

Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining.

Turi A, Loglisci C, Salvemini E, Grillo G, Malerba D, D'Elia D.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S25. doi: 10.1186/1471-2105-10-S6-S25.

2.

WildSpan: mining structured motifs from protein sequences.

Hsu CM, Chen CY, Liu BJ.

Algorithms Mol Biol. 2011 Mar 31;6(1):6. doi: 10.1186/1748-7188-6-6.

3.

3'-UTR SIRF: a database for identifying clusters of whort interspersed repeats in 3' untranslated regions.

Andken BB, Lim I, Benson G, Vincent JJ, Ferenc MT, Heinrich B, Jarzylo LA, Man HY, Deshler JO.

BMC Bioinformatics. 2007 Jul 30;8:274.

4.

Detection of generic spaced motifs using submotif pattern mining.

Wijaya E, Rajaraman K, Yiu SM, Sung WK.

Bioinformatics. 2007 Jun 15;23(12):1476-85. Epub 2007 May 5.

PMID:
17483509
5.

MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa.

Catalano D, Licciulli F, Turi A, Grillo G, Saccone C, D'Elia D.

BMC Bioinformatics. 2006 Jan 24;7:36.

6.

RegRNA: an integrated web server for identifying regulatory RNA motifs and elements.

Huang HY, Chien CH, Jen KH, Huang HD.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W429-34.

7.
8.

Genome-wide computational identification of functional RNA elements in Trypanosoma brucei.

Mao Y, Najafabadi HS, Salavati R.

BMC Genomics. 2009 Aug 4;10:355. doi: 10.1186/1471-2164-10-355.

9.

Integrated functional and bioinformatics approach for the identification and experimental verification of RNA signals: application to HIV-1 INS.

Wolff H, Brack-Werner R, Neumann M, Werner T, Schneider R.

Nucleic Acids Res. 2003 Jun 1;31(11):2839-51.

10.
11.

In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions.

Aouacheria A, Navratil V, López-Pérez R, Gutiérrez NC, Churkin A, Barash D, Mouchiroud D, Gautier C.

BMC Genomics. 2007 Jan 3;8:2.

12.

H-InvDB in 2009: extended database and data mining resources for human genes and transcripts.

Yamasaki C, Murakami K, Takeda J, Sato Y, Noda A, Sakate R, Habara T, Nakaoka H, Todokoro F, Matsuya A, Imanishi T, Gojobori T.

Nucleic Acids Res. 2010 Jan;38(Database issue):D626-32. doi: 10.1093/nar/gkp1020. Epub 2009 Nov 23.

13.

Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression.

Quattrone A, Dassi E.

Methods Mol Biol. 2016;1358:3-28. doi: 10.1007/978-1-4939-3067-8_1.

PMID:
26463374
15.

UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.

Grillo G, Turi A, Licciulli F, Mignone F, Liuni S, Banfi S, Gennarino VA, Horner DS, Pavesi G, Picardi E, Pesole G.

Nucleic Acids Res. 2010 Jan;38(Database issue):D75-80. doi: 10.1093/nar/gkp902. Epub 2009 Oct 30.

16.

Bioinformatics approaches for studying untranslated regions of mRNAs.

Bagga PS.

Methods Mol Biol. 2008;419:1-21. doi: 10.1007/978-1-59745-033-1_1.

PMID:
18369972
17.

Web-based tools for studying RNA structure and function.

George AD, Tenenbaum SA.

Methods Mol Biol. 2011;703:67-86. doi: 10.1007/978-1-59745-248-9_6.

PMID:
21125484
18.

ProFAT: a web-based tool for the functional annotation of protein sequences.

Bradshaw CR, Surendranath V, Habermann B.

BMC Bioinformatics. 2006 Oct 23;7:466.

19.
20.

The untranslated regions of eukaryotic mRNAs: structure, function, evolution and bioinformatic tools for their analysis.

Pesole G, Grillo G, Larizza A, Liuni S.

Brief Bioinform. 2000 Sep;1(3):236-49. Review.

PMID:
11465035

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