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Items: 1 to 20 of 128

1.

Apprehending multicellularity: regulatory networks, genomics, and evolution.

Aravind L, Anantharaman V, Venancio TM.

Birth Defects Res C Embryo Today. 2009 Jun;87(2):143-64. doi: 10.1002/bdrc.20153. Review. Erratum in: Birth Defects Res C Embryo Today. 2009 Sep;87(3):296.

2.

Comparative genomics of transcription factors and chromatin proteins in parasitic protists and other eukaryotes.

Iyer LM, Anantharaman V, Wolf MY, Aravind L.

Int J Parasitol. 2008 Jan;38(1):1-31. Epub 2007 Sep 15. Review.

3.

Comparative analysis of gene regulatory networks: from network reconstruction to evolution.

Thompson D, Regev A, Roy S.

Annu Rev Cell Dev Biol. 2015;31:399-428. doi: 10.1146/annurev-cellbio-100913-012908. Epub 2015 Sep 3. Review.

PMID:
26355593
4.

Convergent evolution of gene networks by single-gene duplications in higher eukaryotes.

Amoutzias GD, Robertson DL, Oliver SG, Bornberg-Bauer E.

EMBO Rep. 2004 Mar;5(3):274-9. Epub 2004 Feb 13.

5.

Regulatory network structure as a dominant determinant of transcription factor evolutionary rate.

Coulombe-Huntington J, Xia Y.

PLoS Comput Biol. 2012;8(10):e1002734. doi: 10.1371/journal.pcbi.1002734. Epub 2012 Oct 18.

6.

Comparative genomics of protists: new insights into the evolution of eukaryotic signal transduction and gene regulation.

Anantharaman V, Iyer LM, Aravind L.

Annu Rev Microbiol. 2007;61:453-75. Review.

PMID:
17506670
7.

Plant 'evo-devo' goes genomic: from candidate genes to regulatory networks.

de Bruijn S, Angenent GC, Kaufmann K.

Trends Plant Sci. 2012 Aug;17(8):441-7. doi: 10.1016/j.tplants.2012.05.002. Epub 2012 Jun 13.

PMID:
22698378
8.

Towards an evolutionary model of transcription networks.

Xie D, Chen CC, He X, Cao X, Zhong S.

PLoS Comput Biol. 2011 Jun;7(6):e1002064. doi: 10.1371/journal.pcbi.1002064. Epub 2011 Jun 9.

9.

Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach.

Rivera AS, Pankey MS, Plachetzki DC, Villacorta C, Syme AE, Serb JM, Omilian AR, Oakley TH.

BMC Evol Biol. 2010 Apr 30;10:123. doi: 10.1186/1471-2148-10-123.

10.

Understanding the regulatory genome.

Alonso ME, Pernaute B, Crespo M, Gómez-Skarmeta JL, Manzanares M.

Int J Dev Biol. 2009;53(8-10):1367-78. doi: 10.1387/ijdb.072428ma. Review.

11.

Toward understanding the evolution of vertebrate gene regulatory networks: comparative genomics and epigenomic approaches.

Martinez-Morales JR.

Brief Funct Genomics. 2016 Jul;15(4):315-21. doi: 10.1093/bfgp/elv032. Epub 2015 Aug 20. Review.

PMID:
26293604
12.

The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses.

On T, Xiong X, Pu S, Turinsky A, Gong Y, Emili A, Zhang Z, Greenblatt J, Wodak SJ, Parkinson J.

Proteins. 2010 Jul;78(9):2075-89. doi: 10.1002/prot.22723.

PMID:
20455264
13.

Evolution of gene regulation--on the road towards computational inferences.

Fuellen G.

Brief Bioinform. 2011 Mar;12(2):122-31. doi: 10.1093/bib/bbq060. Epub 2010 Aug 11. Review.

PMID:
20702596
14.

Genomics and expression profiles of the Hedgehog and Notch signaling pathways in sea urchin development.

Walton KD, Croce JC, Glenn TD, Wu SY, McClay DR.

Dev Biol. 2006 Dec 1;300(1):153-64. Epub 2006 Sep 1.

15.

Comparative genomics as a tool in the understanding of eukaryotic transcriptional regulation.

Baggs JE, Hayes KR, Hogenesch JB.

Curr Opin Genet Dev. 2005 Dec;15(6):634-9. Epub 2005 Oct 13. Review.

PMID:
16226457
16.

Evolutionary plasticity of developmental gene regulatory network architecture.

Hinman VF, Davidson EH.

Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19404-9. Epub 2007 Nov 27.

17.

Implications of Developmental Gene Regulatory Networks Inside and Outside Developmental Biology.

Peter IS, Davidson EH.

Curr Top Dev Biol. 2016;117:237-51. doi: 10.1016/bs.ctdb.2015.12.014. Epub 2016 Feb 1. Review.

PMID:
26969981
18.

Evolution of metabolic networks by gain and loss of enzymatic reaction in eukaryotes.

Tanaka T, Ikeo K, Gojobori T.

Gene. 2006 Jan 3;365:88-94. Epub 2005 Dec 15.

PMID:
16360290
19.

Origin and evolution of the Notch signalling pathway: an overview from eukaryotic genomes.

Gazave E, Lapébie P, Richards GS, Brunet F, Ereskovsky AV, Degnan BM, Borchiellini C, Vervoort M, Renard E.

BMC Evol Biol. 2009 Oct 13;9:249. doi: 10.1186/1471-2148-9-249.

20.

Function prediction and protein networks.

Huynen MA, Snel B, von Mering C, Bork P.

Curr Opin Cell Biol. 2003 Apr;15(2):191-8. Review.

PMID:
12648675

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