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Items: 1 to 20 of 130


Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing.

Wang X, Wang K, Radovich M, Wang Y, Wang G, Feng W, Sanford JR, Liu Y.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S4. doi: 10.1186/1471-2164-10-S1-S4.


Evolution of alternative splicing in primate brain transcriptomes.

Lin L, Shen S, Jiang P, Sato S, Davidson BL, Xing Y.

Hum Mol Genet. 2010 Aug 1;19(15):2958-73. doi: 10.1093/hmg/ddq201. Epub 2010 May 11.


Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers.

Goren A, Ram O, Amit M, Keren H, Lev-Maor G, Vig I, Pupko T, Ast G.

Mol Cell. 2006 Jun 23;22(6):769-81.


Identification of conserved splicing motifs in mutually exclusive exons of 15 insect species.

Buendia P, Tyree J, Loredo R, Hsu SN.

BMC Genomics. 2012 Apr 12;13 Suppl 2:S1. doi: 10.1186/1471-2164-13-S2-S1.


Conserved RNA cis-elements regulate alternative splicing of Lepidopteran doublesex.

Wang XY, Zheng ZZ, Song HS, Xu YZ.

Insect Biochem Mol Biol. 2014 Jan;44:1-11. doi: 10.1016/j.ibmb.2013.10.009. Epub 2013 Nov 12.


Splicing regulation: from a parts list of regulatory elements to an integrated splicing code.

Wang Z, Burge CB.

RNA. 2008 May;14(5):802-13. doi: 10.1261/rna.876308. Epub 2008 Mar 27. Review.


The "alternative" choice of constitutive exons throughout evolution.

Lev-Maor G, Goren A, Sela N, Kim E, Keren H, Doron-Faigenboim A, Leibman-Barak S, Pupko T, Ast G.

PLoS Genet. 2007 Nov;3(11):e203.


Alternative splicing and genetic diversity: silencers are more frequently modified by SNVs associated with alternative exon/intron borders.

de Souza JE, Ramalho RF, Galante PA, Meyer D, de Souza SJ.

Nucleic Acids Res. 2011 Jul;39(12):4942-8. doi: 10.1093/nar/gkr081. Epub 2011 Mar 11.


Global analysis of alternative splicing differences between humans and chimpanzees.

Calarco JA, Xing Y, Cáceres M, Calarco JP, Xiao X, Pan Q, Lee C, Preuss TM, Blencowe BJ.

Genes Dev. 2007 Nov 15;21(22):2963-75. Epub 2007 Oct 31.


Use of minigene systems to dissect alternative splicing elements.

Cooper TA.

Methods. 2005 Dec;37(4):331-40.


Genomic features defining exonic variants that modulate splicing.

Woolfe A, Mullikin JC, Elnitski L.

Genome Biol. 2010;11(2):R20. doi: 10.1186/gb-2010-11-2-r20. Epub 2010 Feb 16.


A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation.

Aznarez I, Barash Y, Shai O, He D, Zielenski J, Tsui LC, Parkinson J, Frey BJ, Rommens JM, Blencowe BJ.

Genome Res. 2008 Aug;18(8):1247-58. doi: 10.1101/gr.073155.107. Epub 2008 May 2.


Unusual intron conservation near tissue-regulated exons found by splicing microarrays.

Sugnet CW, Srinivasan K, Clark TA, O'Brien G, Cline MS, Wang H, Williams A, Kulp D, Blume JE, Haussler D, Ares M Jr.

PLoS Comput Biol. 2006 Jan;2(1):e4. Epub 2006 Jan 20.


Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins.

Hsiao YH, Bahn JH, Lin X, Chan TM, Wang R, Xiao X.

Genome Res. 2016 Apr;26(4):440-50. doi: 10.1101/gr.193359.115. Epub 2016 Feb 17.


Testing for natural selection in human exonic splicing regulators associated with evolutionary rate shifts.

Ramalho RF, Gelfman S, de Souza JE, Ast G, de Souza SJ, Meyer D.

J Mol Evol. 2013 Apr;76(4):228-39. doi: 10.1007/s00239-013-9555-2. Epub 2013 Mar 26.


Effect of exonic splicing regulation on synonymous codon usage in alternatively spliced exons of Dscam.

Takahashi A.

BMC Evol Biol. 2009 Aug 27;9:214. doi: 10.1186/1471-2148-9-214.

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