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Items: 1 to 20 of 702

1.

Analyzing miRNA co-expression networks to explore TF-miRNA regulation.

Bandyopadhyay S, Bhattacharyya M.

BMC Bioinformatics. 2009 May 28;10:163. doi: 10.1186/1471-2105-10-163.

2.

Participation of microRNAs in human interactome: extraction of microRNA-microRNA regulations.

Sengupta D, Bandyopadhyay S.

Mol Biosyst. 2011 Jun;7(6):1966-73. doi: 10.1039/c0mb00347f. Epub 2011 Apr 11.

PMID:
21483898
3.

Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.

4.

miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations.

Liu H, Jin T, Liao R, Wan L, Xu B, Zhou S, Guan J.

BMC Plant Biol. 2012 May 14;12:68. doi: 10.1186/1471-2229-12-68.

5.

Inferring microRNA and transcription factor regulatory networks in heterogeneous data.

Le TD, Liu L, Liu B, Tsykin A, Goodall GJ, Satou K, Li J.

BMC Bioinformatics. 2013 Mar 11;14:92. doi: 10.1186/1471-2105-14-92.

6.

An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma.

Luo Z, Zhang L, Li Z, Li X, Li G, Yu H, Jiang C, Dai Y, Guo X, Xiang J, Li G.

BMC Med Genomics. 2012 Jan 19;5:3. doi: 10.1186/1755-8794-5-3.

7.

A novel framework for inferring condition-specific TF and miRNA co-regulation of protein-protein interactions.

Zhang J, Le TD, Liu L, He J, Li J.

Gene. 2016 Feb 10;577(1):55-64. doi: 10.1016/j.gene.2015.11.023. Epub 2015 Nov 27.

PMID:
26611531
8.

TransmiR: a transcription factor-microRNA regulation database.

Wang J, Lu M, Qiu C, Cui Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D119-22. doi: 10.1093/nar/gkp803. Epub 2009 Sep 28.

9.

Inferring coregulation of transcription factors and microRNAs in breast cancer.

Wu JH, Sun YJ, Hsieh PH, Shieh GS.

Gene. 2013 Apr 10;518(1):139-44. doi: 10.1016/j.gene.2012.11.056. Epub 2012 Dec 14.

PMID:
23246694
10.

Module network inference from a cancer gene expression data set identifies microRNA regulated modules.

Bonnet E, Tatari M, Joshi A, Michoel T, Marchal K, Berx G, Van de Peer Y.

PLoS One. 2010 Apr 14;5(4):e10162. doi: 10.1371/journal.pone.0010162.

11.

Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy.

Liu B, Li J, Tsykin A, Liu L, Gaur AB, Goodall GJ.

BMC Bioinformatics. 2009 Dec 10;10:408. doi: 10.1186/1471-2105-10-408.

12.

MicroRNA networks alter to conform to transcription factor networks adding redundancy and reducing the repertoire of target genes for coordinated regulation.

Iwama H, Murao K, Imachi H, Ishida T.

Mol Biol Evol. 2011 Jan;28(1):639-46. doi: 10.1093/molbev/msq231. Epub 2010 Aug 30.

PMID:
20805189
13.

microRNA evolution in a human transcription factor and microRNA regulatory network.

Qiu C, Wang J, Yao P, Wang E, Cui Q.

BMC Syst Biol. 2010 Jun 29;4:90. doi: 10.1186/1752-0509-4-90.

14.

Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network.

Wang J, Haubrock M, Cao KM, Hua X, Zhang CY, Wingender E, Li J.

BMC Syst Biol. 2011 Dec 16;5:199. doi: 10.1186/1752-0509-5-199.

15.

Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model.

Joung JG, Fei Z.

Bioinformatics. 2009 Feb 1;25(3):387-93. doi: 10.1093/bioinformatics/btn626. Epub 2008 Dec 4.

PMID:
19056778
16.

Reconstruction and analysis of transcription factor-miRNA co-regulatory feed-forward loops in human cancers using filter-wrapper feature selection.

Peng C, Wang M, Shen Y, Feng H, Li A.

PLoS One. 2013 Oct 29;8(10):e78197. doi: 10.1371/journal.pone.0078197. eCollection 2013.

17.

A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions.

Engelmann JC, Spang R.

PLoS One. 2012;7(7):e40634. doi: 10.1371/journal.pone.0040634. Epub 2012 Jul 17.

18.

Topological patterns in microRNA-gene regulatory network: studies in colorectal and breast cancer.

Sengupta D, Bandyopadhyay S.

Mol Biosyst. 2013 Jun;9(6):1360-71. doi: 10.1039/c3mb25518b. Epub 2013 Mar 11.

PMID:
23475160
19.

Toward microRNA-mediated gene regulatory networks in plants.

Meng Y, Shao C, Chen M.

Brief Bioinform. 2011 Nov;12(6):645-59. doi: 10.1093/bib/bbq091. Epub 2011 Jan 23.

PMID:
21262742
20.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

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