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Items: 1 to 20 of 103

1.

In silico molecular engineering for a targeted replacement in a tumor-homing peptide.

Zanuy D, Flores-Ortega A, Jiménez AI, Calaza MI, Cativiela C, Nussinov R, Ruoslahti E, Alemán C.

J Phys Chem B. 2009 Jun 4;113(22):7879-89. doi: 10.1021/jp9006119.

2.

Exploring the energy landscape of a molecular engineered analog of a tumor-homing peptide.

Revilla-López G, Torras J, Nussinov R, Alemán C, Zanuy D.

Phys Chem Chem Phys. 2011 Jun 7;13(21):9986-94. doi: 10.1039/c0cp02572k. Epub 2011 Jan 24.

PMID:
21258721
3.

The energy landscape of a selective tumor-homing pentapeptide.

Zanuy D, Flores-Ortega A, Casanovas J, Curcó D, Nussinov R, Alemán C.

J Phys Chem B. 2008 Jul 24;112(29):8692-700. doi: 10.1021/jp711477k. Epub 2008 Jun 28.

4.

Conformational profile of a proline-arginine hybrid.

Revilla-López G, Jiménez AI, Cativiela C, Nussinov R, Alemán C, Zanuy D.

J Chem Inf Model. 2010 Oct 25;50(10):1781-9. doi: 10.1021/ci100135f.

5.

Isomerization of the Xaa-Pro peptide bond induced by ionic interactions of arginine.

Tsikaris V, Sakarellos-Daitsiotis M, Tzovaras D, Sakarellos C, Orlewski P, Cung MT, Marraud M.

Biopolymers. 1996 Jun;38(6):673-82.

PMID:
8652789
6.

Influence of the dye presence on the conformational preferences of CREKA, a tumor homing linear pentapeptide.

Zanuy D, Curcó D, Nussinov R, Alemán C.

Biopolymers. 2009;92(2):83-93. doi: 10.1002/bip.21122.

PMID:
19051312
7.

Engineering strategy to improve peptide analogs: from structure-based computational design to tumor homing.

Zanuy D, Sayago FJ, Revilla-López G, Ballano G, Agemy L, Kotamraju VR, Jiménez AI, Cativiela C, Nussinov R, Sawvel AM, Stucky G, Ruoslahti E, Alemán C.

J Comput Aided Mol Des. 2013 Jan;27(1):31-43. doi: 10.1007/s10822-012-9623-5. Epub 2012 Dec 14.

PMID:
23239171
8.

Beta VI turns in peptides and proteins: a model peptide mimicry.

Müller G, Gurrath M, Kurz M, Kessler H.

Proteins. 1993 Mar;15(3):235-51.

PMID:
8456095
9.

Effect of side chain length on intrahelical interactions between carboxylate- and guanidinium-containing amino acids.

Kuo HT, Yang PA, Wang WR, Hsu HC, Wu CH, Ting YT, Weng MH, Kuo LH, Cheng RP.

Amino Acids. 2014 Aug;46(8):1867-83. doi: 10.1007/s00726-014-1737-8. Epub 2014 Apr 18.

PMID:
24744084
10.

Prosomatostatin processing in Neuro2A cells. Role of beta-turn structure in the vicinity of the Arg-Lys cleavage site.

Brakch N, Boileau G, Simonetti M, Nault C, Joseph-Bravo P, Rholam M, Cohen P.

Eur J Biochem. 1993 Aug 15;216(1):39-47.

11.

Side-chain to backbone interactions dictate the conformational preferences of a cyclopentane arginine analogue.

Revilla-López G, Torras J, Jiménez AI, Cativiela C, Nussinov R, Alemán C.

J Org Chem. 2009 Mar 20;74(6):2403-12. doi: 10.1021/jo802704h.

12.
13.

A conformational study of Lys-Arg-Asp-Ser and analogs, a series of potent antithrombotic peptides. An approach based on simulated annealing and 1H NMR.

Meddeb S, Demaret JP, Ballini JP, Fiat AM, Jollès P, Ptak M, Vigny P.

J Biomol Struct Dyn. 1994 Apr;11(5):959-81.

PMID:
7946066
14.

Mass spectrometric identification of the trypsin cleavage pathway in lysyl-proline containing oligotuftsin peptides.

Manea M, Mezo G, Hudecz F, Przybylski M.

J Pept Sci. 2007 Apr;13(4):227-36.

PMID:
17394121
15.

The beta-turn scaffold of tripeptide containing an azaphenylalanine residue.

Lee HJ, Park HM, Lee KB.

Biophys Chem. 2007 Jan;125(1):117-26. Epub 2006 Aug 4.

PMID:
16890344
16.

Structural characterization and optimization of antibody-selected phage library mimotopes of an antigen associated with autoimmune recurrent thrombosis.

Sem DS, Baker BL, Victoria EJ, Jones DS, Marquis D, Yu L, Parks J, Coutts SM.

Biochemistry. 1998 Nov 17;37(46):16069-81.

PMID:
9819200
17.

Structural requirements for conserved arginine of parathyroid hormone.

Barbier JR, MacLean S, Whitfield JF, Morley P, Willick GE.

Biochemistry. 2001 Jul 31;40(30):8955-61.

PMID:
11467957
18.

Preferred side-chain conformation of arginine residues in a triple-helical structure.

Okuyama K, Haga M, Noguchi K, Tanaka T.

Biopolymers. 2014 Oct;101(10):1000-9. doi: 10.1002/bip.22478.

PMID:
24615532
19.

[Spatial structure of isoleucine pentapeptides Glu-Phe-Leu-Arg-Ile-NH2 and Pro-Phe-Tyr-Arg-Ile-NH2].

Ismailova LI, Akhmedov NA, Abbasly RM.

Biofizika. 2008 Jan-Feb;53(1):14-21. Russian.

PMID:
18488495
20.

[Tertiary structure of myelopeptides. II. Conformational analysis of Phe-Arg-Pro-Arg-Ile-Met-Thr-Pro, Val-Val-Tyr-Pro-Asp, and Val-Asp-Pro-Pro].

Ismailova LI, Akhmetov NA, Abbasly RM, Godzhaev NM.

Bioorg Khim. 2005 Mar-Apr;31(2):140-6. Russian.

PMID:
15889787

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