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Items: 1 to 20 of 90

1.

Insignia: a DNA signature search web server for diagnostic assay development.

Phillippy AM, Ayanbule K, Edwards NJ, Salzberg SL.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W229-34. doi: 10.1093/nar/gkp286. Epub 2009 May 5.

2.

Comprehensive DNA signature discovery and validation.

Phillippy AM, Mason JA, Ayanbule K, Sommer DD, Taviani E, Huq A, Colwell RR, Knight IT, Salzberg SL.

PLoS Comput Biol. 2007 May;3(5):e98. Epub 2007 Apr 20.

3.

Environmental Vibrio parahaemolyticus DNA signatures validation.

Caburlotto G, Knight IT, Lleo MM, Taviani E, Huq A, Colwell RR.

Syst Appl Microbiol. 2011 Dec;34(8):617-20. doi: 10.1016/j.syapm.2011.08.004. Epub 2011 Sep 22.

PMID:
21940129
4.
5.

DMINDA: an integrated web server for DNA motif identification and analyses.

Ma Q, Zhang H, Mao X, Zhou C, Liu B, Chen X, Xu Y.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W12-9. doi: 10.1093/nar/gku315. Epub 2014 Apr 21.

6.

The Microbe browser for comparative genomics.

Gattiker A, Dessimoz C, Schneider A, Xenarios I, Pagni M, Rougemont J.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W296-9. doi: 10.1093/nar/gkp268. Epub 2009 Apr 30.

7.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

8.

Web-based primer design software for genome-scale genotyping by pyrosequencing.

Ringquist S, Pecoraro C, Lu Y, Styche A, Rudert WA, Benos PV, Trucco M.

Methods Mol Biol. 2007;373:25-38.

PMID:
17185755
9.

MICAS: a fully automated web server for microsatellite extraction and analysis from prokaryote and viral genomic sequences.

Sreenu VB, Ranjitkumar G, Swaminathan S, Priya S, Bose B, Pavan MN, Thanu G, Nagaraju J, Nagarajaram HA.

Appl Bioinformatics. 2003;2(3):165-8.

PMID:
15130803
10.

PathoGene: a pathogen coding sequence discovery and analysis resource.

Ng KW, Lawson J, Garner HR.

Biotechniques. 2004 Aug;37(2):218, 220-2.

PMID:
15335212
11.

WebGBrowse--a web server for GBrowse.

Podicheti R, Gollapudi R, Dong Q.

Bioinformatics. 2009 Jun 15;25(12):1550-1. doi: 10.1093/bioinformatics/btp239. Epub 2009 Apr 8.

PMID:
19357095
12.

GSV: a web-based genome synteny viewer for customized data.

Revanna KV, Chiu CC, Bierschank E, Dong Q.

BMC Bioinformatics. 2011 Aug 2;12:316. doi: 10.1186/1471-2105-12-316.

14.

INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles.

Alam I, Antunes A, Kamau AA, Ba Alawi W, Kalkatawi M, Stingl U, Bajic VB.

PLoS One. 2013 Dec 6;8(12):e82210. doi: 10.1371/journal.pone.0082210. eCollection 2013.

15.

Low-bandwidth and non-compute intensive remote identification of microbes from raw sequencing reads.

Gautier L, Lund O.

PLoS One. 2013 Dec 31;8(12):e83784. doi: 10.1371/journal.pone.0083784. eCollection 2013.

16.

DPVweb: a comprehensive database of plant and fungal virus genes and genomes.

Adams MJ, Antoniw JF.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D382-5.

17.

Reads2Type: a web application for rapid microbial taxonomy identification.

Saputra D, Rasmussen S, Larsen MV, Haddad N, Sperotto MM, Aarestrup FM, Lund O, Sicheritz-Pontén T.

BMC Bioinformatics. 2015 Nov 25;16:398. doi: 10.1186/s12859-015-0829-0.

18.

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

Besemer J, Borodovsky M.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W451-4.

19.

Rapid identification of non-human sequences in high-throughput sequencing datasets.

Bhaduri A, Qu K, Lee CS, Ungewickell A, Khavari PA.

Bioinformatics. 2012 Apr 15;28(8):1174-5. doi: 10.1093/bioinformatics/bts100. Epub 2012 Feb 28.

20.

mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes.

Shao Y, He X, Harrison EM, Tai C, Ou HY, Rajakumar K, Deng Z.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W194-200. doi: 10.1093/nar/gkq326. Epub 2010 Apr 30.

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