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Items: 1 to 20 of 241

1.

SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies.

Xu Z, Taylor JA.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W600-5. doi: 10.1093/nar/gkp290. Epub 2009 May 5.

2.

ICSNPathway: identify candidate causal SNPs and pathways from genome-wide association study by one analytical framework.

Zhang K, Chang S, Cui S, Guo L, Zhang L, Wang J.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W437-43. doi: 10.1093/nar/gkr391. Epub 2011 May 27.

3.

SNP-based pathway enrichment analysis for genome-wide association studies.

Weng L, Macciardi F, Subramanian A, Guffanti G, Potkin SG, Yu Z, Xie X.

BMC Bioinformatics. 2011 Apr 15;12:99. doi: 10.1186/1471-2105-12-99.

4.

Post genome-wide association studies functional characterization of prostate cancer risk loci.

Jiang J, Cui W, Vongsangnak W, Hu G, Shen B.

BMC Genomics. 2013;14 Suppl 8:S9. doi: 10.1186/1471-2164-14-S8-S9. Epub 2013 Dec 9.

5.

SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study.

Saccone SF, Bolze R, Thomas P, Quan J, Mehta G, Deelman E, Tischfield JA, Rice JP.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W201-9. doi: 10.1093/nar/gkq513. Epub 2010 Jun 6.

6.

A genome-wide survey for SNPs altering microRNA seed sites identifies functional candidates in GWAS.

Richardson K, Lai CQ, Parnell LD, Lee YC, Ordovas JM.

BMC Genomics. 2011 Oct 13;12:504. doi: 10.1186/1471-2164-12-504.

7.

CandiSNPer: a web tool for the identification of candidate SNPs for causal variants.

Schmitt AO, Assmus J, Bortfeldt RH, Brockmann GA.

Bioinformatics. 2010 Apr 1;26(7):969-70. doi: 10.1093/bioinformatics/btq068. Epub 2010 Feb 19.

PMID:
20172942
8.

An efficient weighted tag SNP-set analytical method in genome-wide association studies.

Yan B, Wang S, Jia H, Liu X, Wang X.

BMC Genet. 2015 Mar 13;16:25. doi: 10.1186/s12863-015-0182-3.

9.

Tag SNP selection for candidate gene association studies using HapMap and gene resequencing data.

Xu Z, Kaplan NL, Taylor JA.

Eur J Hum Genet. 2007 Oct;15(10):1063-70. Epub 2007 Jun 13.

10.

Snat: a SNP annotation tool for bovine by integrating various sources of genomic information.

Jiang J, Jiang L, Zhou B, Fu W, Liu JF, Zhang Q.

BMC Genet. 2011 Oct 7;12:85. doi: 10.1186/1471-2156-12-85.

11.

LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs.

Wang MC, Chen FC, Chen YZ, Huang YT, Chuang TJ.

BMC Res Notes. 2012 May 2;5:212. doi: 10.1186/1756-0500-5-212.

12.

ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation.

Barenboim M, Manke T.

Bioinformatics. 2013 Sep 1;29(17):2197-8. doi: 10.1093/bioinformatics/btt356. Epub 2013 Jun 19.

13.

Systematic enrichment analysis of potentially functional regions for 103 prostate cancer risk-associated loci.

Chen H, Yu H, Wang J, Zhang Z, Gao Z, Chen Z, Lu Y, Liu W, Jiang D, Zheng SL, Wei GH, Issacs WB, Feng J, Xu J.

Prostate. 2015 Sep;75(12):1264-76. doi: 10.1002/pros.23008. Epub 2015 May 25. Review.

PMID:
26015065
14.

Inferring causative variants in microRNA target sites.

Thomas LF, Saito T, Sætrom P.

Nucleic Acids Res. 2011 Sep 1;39(16):e109. doi: 10.1093/nar/gkr414. Epub 2011 Jun 21.

15.

On the identification of potential regulatory variants within genome wide association candidate SNP sets.

Chen CY, Chang IS, Hsiung CA, Wasserman WW.

BMC Med Genomics. 2014 Jun 11;7:34. doi: 10.1186/1755-8794-7-34.

16.

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.

Merelli I, Calabria A, Cozzi P, Viti F, Mosca E, Milanesi L.

BMC Bioinformatics. 2013;14 Suppl 1:S9. doi: 10.1186/1471-2105-14-S1-S9. Epub 2013 Jan 14.

17.

Genome-wide selection of tag SNPs using multiple-marker correlation.

Hao K.

Bioinformatics. 2007 Dec 1;23(23):3178-84. Epub 2007 Nov 15.

PMID:
18006555
18.

MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs.

Liu C, Zhang F, Li T, Lu M, Wang L, Yue W, Zhang D.

BMC Genomics. 2012 Nov 23;13:661. doi: 10.1186/1471-2164-13-661.

19.

TAGster: efficient selection of LD tag SNPs in single or multiple populations.

Xu Z, Kaplan NL, Taylor JA.

Bioinformatics. 2007 Dec 1;23(23):3254-5. Epub 2007 Sep 7.

20.

SNPsnap: a Web-based tool for identification and annotation of matched SNPs.

Pers TH, Timshel P, Hirschhorn JN.

Bioinformatics. 2015 Feb 1;31(3):418-20. doi: 10.1093/bioinformatics/btu655. Epub 2014 Oct 13.

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