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Items: 1 to 20 of 191

1.

Mechanism of sequence-specific pausing of bacterial RNA polymerase.

Kireeva ML, Kashlev M.

Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8900-5. doi: 10.1073/pnas.0900407106. Epub 2009 Apr 24.

2.

A dynamic model for processive transcription elongation and backtracking long pauses by multisubunit RNA polymerases.

Xie P.

Proteins. 2012 Aug;80(8):2020-34. doi: 10.1002/prot.24090. Epub 2012 May 17.

PMID:
22488837
4.

Structural basis of transcriptional pausing in bacteria.

Weixlbaumer A, Leon K, Landick R, Darst SA.

Cell. 2013 Jan 31;152(3):431-41. doi: 10.1016/j.cell.2012.12.020.

5.

Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo.

Imashimizu M, Takahashi H, Oshima T, McIntosh C, Bubunenko M, Court DL, Kashlev M.

Genome Biol. 2015 May 15;16:98. doi: 10.1186/s13059-015-0666-5. Erratum in: Genome Biol. 2015;16:270.

6.

Intrinsic translocation barrier as an initial step in pausing by RNA polymerase II.

Imashimizu M, Kireeva ML, Lubkowska L, Gotte D, Parks AR, Strathern JN, Kashlev M.

J Mol Biol. 2013 Feb 22;425(4):697-712. doi: 10.1016/j.jmb.2012.12.002. Epub 2012 Dec 10.

PMID:
23238253
7.

Template misalignment in multisubunit RNA polymerases and transcription fidelity.

Kashkina E, Anikin M, Brueckner F, Pomerantz RT, McAllister WT, Cramer P, Temiakov D.

Mol Cell. 2006 Oct 20;24(2):257-66.

8.

Trigger-helix folding pathway and SI3 mediate catalysis and hairpin-stabilized pausing by Escherichia coli RNA polymerase.

Windgassen TA, Mooney RA, Nayak D, Palangat M, Zhang J, Landick R.

Nucleic Acids Res. 2014 Nov 10;42(20):12707-21. doi: 10.1093/nar/gku997. Epub 2014 Oct 21.

9.

Transcription pausing by Escherichia coli RNA polymerase is modulated by downstream DNA sequences.

Lee DN, Phung L, Stewart J, Landick R.

J Biol Chem. 1990 Sep 5;265(25):15145-53.

10.
11.

Characteristics of σ-dependent pausing by RNA polymerases from Escherichia coli and Thermus aquaticus.

Zhilina EV, Miropolskaya NA, Bass IA, Brodolin KL, Kulbachinskiy AV.

Biochemistry (Mosc). 2011 Oct;76(10):1098-106. doi: 10.1134/S0006297911100038.

12.

RNA polymerase pausing and nascent-RNA structure formation are linked through clamp-domain movement.

Hein PP, Kolb KE, Windgassen T, Bellecourt MJ, Darst SA, Mooney RA, Landick R.

Nat Struct Mol Biol. 2014 Sep;21(9):794-802. doi: 10.1038/nsmb.2867. Epub 2014 Aug 10.

13.

Real-Time Observation of Backtracking by Bacterial RNA Polymerase.

Lass-Napiorkowska A, Heyduk T.

Biochemistry. 2016 Feb 2;55(4):647-58. doi: 10.1021/acs.biochem.5b01184. Epub 2016 Jan 21.

PMID:
26745324
15.

Discrimination against deoxyribonucleotide substrates by bacterial RNA polymerase.

Svetlov V, Vassylyev DG, Artsimovitch I.

J Biol Chem. 2004 Sep 10;279(37):38087-90. Epub 2004 Jul 15.

16.

Sequence-dependent kinetic model for transcription elongation by RNA polymerase.

Bai L, Shundrovsky A, Wang MD.

J Mol Biol. 2004 Nov 19;344(2):335-49. Erratum in: J Mol Biol. 2008 Sep 12;381(4):1088.

PMID:
15522289
17.

Differential blocking effects of the acetaldehyde-derived DNA lesion N2-ethyl-2'-deoxyguanosine on transcription by multisubunit and single subunit RNA polymerases.

Cheng TF, Hu X, Gnatt A, Brooks PJ.

J Biol Chem. 2008 Oct 10;283(41):27820-8. doi: 10.1074/jbc.M804086200. Epub 2008 Jul 31.

18.

Kinetics of RNA polymerase initiation and pausing at the lambda late gene promoter in vivo.

Kainz M, Roberts JW.

J Mol Biol. 1995 Dec 15;254(5):808-14.

PMID:
7500352
20.

Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase.

Forde NR, Izhaky D, Woodcock GR, Wuite GJ, Bustamante C.

Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11682-7. Epub 2002 Aug 22.

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