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Items: 1 to 20 of 744

1.

An iterative strategy for precursor ion selection for LC-MS/MS based shotgun proteomics.

Zerck A, Nordhoff E, Resemann A, Mirgorodskaya E, Suckau D, Reinert K, Lehrach H, Gobom J.

J Proteome Res. 2009 Jul;8(7):3239-51. doi: 10.1021/pr800835x.

PMID:
19402737
2.

Global quantitative proteomic profiling through 18O-labeling in combination with MS/MS spectra analysis.

White CA, Oey N, Emili A.

J Proteome Res. 2009 Jul;8(7):3653-65. doi: 10.1021/pr8009098.

PMID:
19400582
3.

Improving mass and liquid chromatography based identification of proteins using bayesian scoring.

Chen SS, Deutsch EW, Yi EC, Li XJ, Goodlett DR, Aebersold R.

J Proteome Res. 2005 Nov-Dec;4(6):2174-84.

PMID:
16335964
5.

Postexperiment monoisotopic mass filtering and refinement (PE-MMR) of tandem mass spectrometric data increases accuracy of peptide identification in LC/MS/MS.

Shin B, Jung HJ, Hyung SW, Kim H, Lee D, Lee C, Yu MH, Lee SW.

Mol Cell Proteomics. 2008 Jun;7(6):1124-34. doi: 10.1074/mcp.M700419-MCP200.

6.

Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.

Heller M, Ye M, Michel PE, Morier P, Stalder D, Jünger MA, Aebersold R, Reymond F, Rossier JS.

J Proteome Res. 2005 Nov-Dec;4(6):2273-82.

PMID:
16335976
7.

The reproducible acquisition of comparative liquid chromatography/tandem mass spectrometry data from complex biological samples.

Stewart II, Zhao L, Le Bihan T, Larsen B, Scozzaro S, Figeys D, Mao GD, Ornatsky O, Dharsee M, Orsi C, Ewing R, Goh T.

Rapid Commun Mass Spectrom. 2004;18(15):1697-710.

PMID:
15282768
8.
9.

Optimal precursor ion selection for LC-MALDI MS/MS.

Zerck A, Nordhoff E, Lehrach H, Reinert K.

BMC Bioinformatics. 2013 Feb 18;14:56. doi: 10.1186/1471-2105-14-56.

10.

Protein identification using 2D-LC-MS/MS.

Delahunty C, Yates JR 3rd.

Methods. 2005 Mar;35(3):248-55.

PMID:
15722221
11.

Design and analysis of quantitative differential proteomics investigations using LC-MS technology.

Bukhman YV, Dharsee M, Ewing R, Chu P, Topaloglou T, Le Bihan T, Goh T, Duewel H, Stewart II, Wisniewski JR, Ng NF.

J Bioinform Comput Biol. 2008 Feb;6(1):107-23.

PMID:
18324749
12.

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

Geromanos SJ, Vissers JP, Silva JC, Dorschel CA, Li GZ, Gorenstein MV, Bateman RH, Langridge JI.

Proteomics. 2009 Mar;9(6):1683-95. doi: 10.1002/pmic.200800562.

PMID:
19294628
13.
14.

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.

Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, Brusniak MY, Vitek O, Aebersold R, Müller M.

Proteomics. 2007 Oct;7(19):3470-80.

PMID:
17726677
15.

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

Michalski A, Cox J, Mann M.

J Proteome Res. 2011 Apr 1;10(4):1785-93. doi: 10.1021/pr101060v.

PMID:
21309581
16.

i-RUBY: a novel software for quantitative analysis of highly accurate shotgun-proteomics liquid chromatography/tandem mass spectrometry data obtained without stable-isotope labeling of proteins.

Wada K, Ogiwara A, Nagasaka K, Tanaka N, Komatsu Y.

Rapid Commun Mass Spectrom. 2011 Apr 15;25(7):960-8. doi: 10.1002/rcm.4943.

PMID:
21416533
17.

Automated 20 kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics.

Shen Y, Zhang R, Moore RJ, Kim J, Metz TO, Hixson KK, Zhao R, Livesay EA, Udseth HR, Smith RD.

Anal Chem. 2005 May 15;77(10):3090-100.

PMID:
15889897
18.

Automated iterative MS/MS acquisition: a tool for improving efficiency of protein identification using a LC-MALDI MS workflow.

Liu H, Yang L, Khainovski N, Dong M, Hall SC, Fisher SJ, Biggin MD, Jin J, Witkowska HE.

Anal Chem. 2011 Aug 15;83(16):6286-93. doi: 10.1021/ac200911v. Erratum in: Anal Chem. 2011 Aug 15;83(16):6293.

PMID:
21761829
19.

MassUntangler: a novel alignment tool for label-free liquid chromatography-mass spectrometry proteomic data.

Ballardini R, Benevento M, Arrigoni G, Pattini L, Roda A.

J Chromatogr A. 2011 Dec 9;1218(49):8859-68. doi: 10.1016/j.chroma.2011.06.062.

PMID:
21783198
20.
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