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Items: 1 to 20 of 99

1.

Bos taurus genome assembly.

Liu Y, Qin X, Song XZ, Jiang H, Shen Y, Durbin KJ, Lien S, Kent MP, Sodeland M, Ren Y, Zhang L, Sodergren E, Havlak P, Worley KC, Weinstock GM, Gibbs RA.

BMC Genomics. 2009 Apr 24;10:180. doi: 10.1186/1471-2164-10-180.

2.

A multiway analysis for identifying high integrity bovine BACs.

Ratnakumar A, Barris W, McWilliam S, Brauning R, McEwan JC, Snelling WM, Dalrymple BP.

BMC Genomics. 2009 Jan 23;10:46. doi: 10.1186/1471-2164-10-46.

3.
4.

Single haplotype assembly of the human genome from a hydatidiform mole.

Steinberg KM, Schneider VA, Graves-Lindsay TA, Fulton RS, Agarwala R, Huddleston J, Shiryev SA, Morgulis A, Surti U, Warren WC, Church DM, Eichler EE, Wilson RK.

Genome Res. 2014 Dec;24(12):2066-76. doi: 10.1101/gr.180893.114.

5.

The Atlas genome assembly system.

Havlak P, Chen R, Durbin KJ, Egan A, Ren Y, Song XZ, Weinstock GM, Gibbs RA.

Genome Res. 2004 Apr;14(4):721-32.

6.

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.

Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C.

BMC Genomics. 2012 Jan 30;13:47. doi: 10.1186/1471-2164-13-47.

7.

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes.

Haiminen N, Feltus FA, Parida L.

BMC Genomics. 2011 Apr 15;12:194. doi: 10.1186/1471-2164-12-194.

8.

Refinement of Bos taurus sequence assembly based on BAC-FISH experiments.

Partipilo G, D'Addabbo P, Lacalandra GM, Liu GE, Rocchi M.

BMC Genomics. 2011 Dec 30;12:639. doi: 10.1186/1471-2164-12-639.

9.

Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, Hodgson A, George RA, Hoskins RA, Laverty T, Muzny DM, Nelson CR, Pacleb JM, Park S, Pfeiffer BD, Richards S, Sodergren EJ, Svirskas R, Tabor PE, Wan K, Stapleton M, Sutton GG, Venter C, Weinstock G, Scherer SE, Myers EW, Gibbs RA, Rubin GM.

Genome Biol. 2002;3(12):RESEARCH0079.

10.

Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome.

Quinn NL, Levenkova N, Chow W, Bouffard P, Boroevich KA, Knight JR, Jarvie TP, Lubieniecki KP, Desany BA, Koop BF, Harkins TT, Davidson WS.

BMC Genomics. 2008 Aug 28;9:404. doi: 10.1186/1471-2164-9-404.

11.

Using comparative genomics to reorder the human genome sequence into a virtual sheep genome.

Dalrymple BP, Kirkness EF, Nefedov M, McWilliam S, Ratnakumar A, Barris W, Zhao S, Shetty J, Maddox JF, O'Grady M, Nicholas F, Crawford AM, Smith T, de Jong PJ, McEwan J, Oddy VH, Cockett NE; International Sheep Genomics Consortium..

Genome Biol. 2007;8(7):R152.

12.

Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals.

Taylor JF, Whitacre LK, Hoff JL, Tizioto PC, Kim J, Decker JE, Schnabel RD.

Genet Sel Evol. 2016 Aug 17;48(1):59. doi: 10.1186/s12711-016-0237-6.

13.

A whole-genome assembly of the domestic cow, Bos taurus.

Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL.

Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42.

14.

A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes.

Aggarwal R, Benatti TR, Gill N, Zhao C, Chen MS, Fellers JP, Schemerhorn BJ, Stuart JJ.

BMC Genomics. 2009 Jul 2;10:293. doi: 10.1186/1471-2164-10-293.

15.

A new rhesus macaque assembly and annotation for next-generation sequencing analyses.

Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Marçais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA, Norgren RB Jr.

Biol Direct. 2014 Oct 14;9(1):20. doi: 10.1186/1745-6150-9-20.

16.

A first generation BAC-based physical map of the rainbow trout genome.

Palti Y, Luo MC, Hu Y, Genet C, You FM, Vallejo RL, Thorgaard GH, Wheeler PA, Rexroad CE 3rd.

BMC Genomics. 2009 Oct 8;10:462. doi: 10.1186/1471-2164-10-462.

17.

The European sea bass Dicentrarchus labrax genome puzzle: comparative BAC-mapping and low coverage shotgun sequencing.

Kuhl H, Beck A, Wozniak G, Canario AV, Volckaert FA, Reinhardt R.

BMC Genomics. 2010 Jan 27;11:68. doi: 10.1186/1471-2164-11-68.

18.

An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.

Febrer M, Goicoechea JL, Wright J, McKenzie N, Song X, Lin J, Collura K, Wissotski M, Yu Y, Ammiraju JS, Wolny E, Idziak D, Betekhtin A, Kudrna D, Hasterok R, Wing RA, Bevan MW.

PLoS One. 2010 Oct 18;5(10):e13461. doi: 10.1371/journal.pone.0013461.

19.

A first generation whole genome RH map of the river buffalo with comparison to domestic cattle.

Amaral ME, Grant JR, Riggs PK, Stafuzza NB, Filho EA, Goldammer T, Weikard R, Brunner RM, Kochan KJ, Greco AJ, Jeong J, Cai Z, Lin G, Prasad A, Kumar S, Saradhi GP, Mathew B, Kumar MA, Miziara MN, Mariani P, Caetano AR, Galvão SR, Tantia MS, Vijh RK, Mishra B, Kumar ST, Pelai VA, Santana AM, Fornitano LC, Jones BC, Tonhati H, Moore S, Stothard P, Womack JE.

BMC Genomics. 2008 Dec 24;9:631. doi: 10.1186/1471-2164-9-631.

20.

Novel transcripts discovered by mining genomic DNA from defined regions of bovine chromosome 6.

Weikard R, Goldammer T, Eberlein A, Kuehn C.

BMC Genomics. 2009 Apr 24;10:186. doi: 10.1186/1471-2164-10-186.

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