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Items: 1 to 20 of 36

1.

ANNIE: integrated de novo protein sequence annotation.

Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh S, Wong WC, Schleiffer A, Eisenhaber F, Schneider G.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W435-40. doi: 10.1093/nar/gkp254. Epub 2009 Apr 23.

2.

ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts.

Choi K, Kim S.

BMC Bioinformatics. 2008 Mar 6;9:145. doi: 10.1186/1471-2105-9-145.

3.

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.

4.

Integrated tools for biomolecular sequence-based function prediction as exemplified by the ANNOTATOR software environment.

Schneider G, Wildpaner M, Sirota FL, Maurer-Stroh S, Eisenhaber B, Eisenhaber F.

Methods Mol Biol. 2010;609:257-67. doi: 10.1007/978-1-60327-241-4_15.

PMID:
20221924
5.

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.

PMID:
17332025
6.

ProCope--protein complex prediction and evaluation.

Krumsiek J, Friedel CC, Zimmer R.

Bioinformatics. 2008 Sep 15;24(18):2115-6. doi: 10.1093/bioinformatics/btn376. Epub 2008 Jul 17.

PMID:
18635566
7.

WebScipio: an online tool for the determination of gene structures using protein sequences.

Odronitz F, Pillmann H, Keller O, Waack S, Kollmar M.

BMC Genomics. 2008 Sep 18;9:422. doi: 10.1186/1471-2164-9-422.

8.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

9.

Protein function prediction and annotation in an integrated environment powered by web services (AFAWE).

Jöcker A, Hoffmann F, Groscurth A, Schoof H.

Bioinformatics. 2008 Oct 15;24(20):2393-4. doi: 10.1093/bioinformatics/btn394. Epub 2008 Aug 12.

PMID:
18697771
10.

ANTHEPROT: an integrated protein sequence analysis software with client/server capabilities.

Deléage G, Combet C, Blanchet C, Geourjon C.

Comput Biol Med. 2001 Jul;31(4):259-67.

PMID:
11334635
11.

ADVICE: Automated Detection and Validation of Interaction by Co-Evolution.

Tan SH, Zhang Z, Ng SK.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W69-72.

12.

Meta-DP: domain prediction meta-server.

Saini HK, Fischer D.

Bioinformatics. 2005 Jun 15;21(12):2917-20. Epub 2005 Apr 19.

PMID:
15840708
13.

ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ.

del Val C, Ernst P, Falkenhahn M, Fladerer C, Glatting KH, Suhai S, Hotz-Wagenblatt A.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W444-50. Epub 2007 May 25.

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16.

PROMPT: a protein mapping and comparison tool.

Schmidt T, Frishman D.

BMC Bioinformatics. 2006 Jul 4;7:331.

17.

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs.

Davey NE, Haslam NJ, Shields DC, Edwards RJ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W534-9. doi: 10.1093/nar/gkq440. Epub 2010 May 23.

18.

Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support.

Canaran P, Stein L, Ware D.

Bioinformatics. 2006 Apr 1;22(7):885-6. Epub 2006 Feb 10.

PMID:
16473875
19.

Goober: a fully integrated and user-friendly microarray data management and analysis solution for core labs and bench biologists.

Luo W, Gudipati M, Jung K, Chen M, Marschke KB.

J Integr Bioinform. 2009 Aug 23;6(1):108. doi: 10.2390/biecoll-jib-2009-108.

PMID:
20134074
20.

UFO: a web server for ultra-fast functional profiling of whole genome protein sequences.

Meinicke P.

BMC Genomics. 2009 Sep 2;10:409. doi: 10.1186/1471-2164-10-409.

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