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Items: 1 to 20 of 461

1.

Stochastic models and numerical algorithms for a class of regulatory gene networks.

Fournier T, Gabriel JP, Pasquier J, Mazza C, Galbete J, Mermod N.

Bull Math Biol. 2009 Aug;71(6):1394-431. doi: 10.1007/s11538-009-9407-9. Epub 2009 Apr 22.

PMID:
19387744
2.

Robust filtering for stochastic genetic regulatory networks with time-varying delay.

Wei G, Wang Z, Lam J, Fraser K, Rao GP, Liu X.

Math Biosci. 2009 Aug;220(2):73-80. doi: 10.1016/j.mbs.2009.04.002. Epub 2009 Apr 23.

PMID:
19393668
3.

Simulation of genetic networks modelled by piecewise deterministic Markov processes.

Zeiser S, Franz U, Wittich O, Liebscher V.

IET Syst Biol. 2008 May;2(3):113-35. doi: 10.1049/iet-syb:20070045.

PMID:
18537453
4.

Steady-state expression of self-regulated genes.

Fournier T, Gabriel JP, Mazza C, Pasquier J, Galbete JL, Mermod N.

Bioinformatics. 2007 Dec 1;23(23):3185-92. Epub 2007 Oct 12.

PMID:
17933850
5.

A Markovian approach to the control of genetic regulatory networks.

Chen PC, Chen JW.

Biosystems. 2007 Sep-Oct;90(2):535-45. Epub 2006 Dec 20.

PMID:
17320274
6.

Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models.

Zhu R, Ribeiro AS, Salahub D, Kauffman SA.

J Theor Biol. 2007 Jun 21;246(4):725-45. Epub 2007 Feb 6.

PMID:
17350653
7.

Distributions for negative-feedback-regulated stochastic gene expression: dimension reduction and numerical solution of the chemical master equation.

Zeron ES, Santillán M.

J Theor Biol. 2010 May 21;264(2):377-85. doi: 10.1016/j.jtbi.2010.02.004. Epub 2010 Feb 6.

PMID:
20144620
8.

Stochastic stability of Markovian jumping uncertain stochastic genetic regulatory networks with interval time-varying delays.

Balasubramaniam P, Rakkiyappan R, Krishnasamy R.

Math Biosci. 2010 Aug;226(2):97-108. doi: 10.1016/j.mbs.2010.04.002. Epub 2010 Apr 27.

PMID:
20430039
9.

A dominated coupling from the past algorithm for the stochastic simulation of networks of biochemical reactions.

Hemberg M, Barahona M.

BMC Syst Biol. 2008 May 8;2:42. doi: 10.1186/1752-0509-2-42.

10.

On the transient and steady-state estimates of interval genetic regulatory networks.

Li P, Lam J, Shu Z.

IEEE Trans Syst Man Cybern B Cybern. 2010 Apr;40(2):336-49. doi: 10.1109/TSMCB.2009.2022402. Epub 2009 Oct 23.

PMID:
19858029
11.

Hub genes with positive feedbacks function as master switches in developmental gene regulatory networks.

Seo CH, Kim JR, Kim MS, Cho KH.

Bioinformatics. 2009 Aug 1;25(15):1898-904. doi: 10.1093/bioinformatics/btp316. Epub 2009 May 13.

PMID:
19439566
12.

Reconstruction of gene regulatory networks under the finite state linear model.

Ruklisa D, Brazma A, Viksna J.

Genome Inform. 2005;16(2):225-36.

PMID:
16901105
13.

Simulation study in Probabilistic Boolean Network models for genetic regulatory networks.

Zhang SQ, Ching WK, Ng MK, Akutsu T.

Int J Data Min Bioinform. 2007;1(3):217-40.

PMID:
18399072
14.
15.

A bottom-up approach to gene regulation.

Guido NJ, Wang X, Adalsteinsson D, McMillen D, Hasty J, Cantor CR, Elston TC, Collins JJ.

Nature. 2006 Feb 16;439(7078):856-60.

PMID:
16482159
16.

Intervention in gene regulatory networks via a stationary mean-first-passage-time control policy.

Vahedi G, Faryabi B, Chamberland JF, Datta A, Dougherty ER.

IEEE Trans Biomed Eng. 2008 Oct;55(10):2319-31. doi: 10.1109/TBME.2008.925677.

PMID:
18838357
17.

Stochastic and delayed stochastic models of gene expression and regulation.

Ribeiro AS.

Math Biosci. 2010 Jan;223(1):1-11. doi: 10.1016/j.mbs.2009.10.007. Epub 2009 Oct 31. Review.

PMID:
19883665
18.

Sequential estimation for prescribed statistical accuracy in stochastic simulation of biological systems.

Sandmann W.

Math Biosci. 2009 Sep;221(1):43-53. doi: 10.1016/j.mbs.2009.06.006. Epub 2009 Jul 2.

PMID:
19576907
19.

Robust model matching design methodology for a stochastic synthetic gene network.

Chen BS, Chang CH, Wang YC, Wu CH, Lee HC.

Math Biosci. 2011 Mar;230(1):23-36. doi: 10.1016/j.mbs.2010.12.007. Epub 2011 Jan 6.

PMID:
21215760
20.

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